Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1176 ATGGCCAACCAACACTCTCTCTTCCTCTATGAAAAACAGTGGTATAAGCAAAATTATAAAAGGGTAACGGATAGCTTGCTTTTAATCCTTCTCTTATTGCTGCTTTGTTACCGTGTTATCTCTGTCAACTATTACTCTTTCCCTTGGTTTGTTGCCCTTTGTTGCGAATCATGGTTCACCATCTCTTGGTTTTTCACCCTCACCACTCAATGGAATCCAGCAATTATCGAAACCTACCCAGATCGTCTCTTGCAAAGTTTTGATTATGCATTGCATGCCTTTTGTTGTTGGTTGGTGAGTTTTCTGAACAGGGTGCAAGAGCTTCCGGCAGTGGACTTGTTTGTGACAACTGCGGACCCTATGCTTGAACCACCCATAATAACAGTGAACACTGTGCTATCTTTATTGGCACTTGATTACCCAGCTCACAAGTTAGCTTGTTATGTTTCCGACGATGGGTGTTCCCCTCTTACCTTCTACGCTCTTCAAGAAGCTTCTGAATTTGCCAAGTTTTGGGTACCATTTTGTAAGAAGTACGAGGTGCAAGTTAGAGCTCCTTTCAGATACTTCTCCGATGAGCCTGAGGCCTCCAAGGCCAACAACATACCGGAATTCAGACAAGAATGGTTAAGAACGAAGGATATGTATGATCTTCTTAGCCGCAGAATAGAGTTAGAAGCGTCCCGAAAATGTCGACTTGATGGAGAATTTGCAGTTTTCTCAAACACTGAGAAGACAAATCATCCAACCATAATCAAGGTTTTATGGGAGAACAAGGAATGCCTTGCAGATGGGTTGCCACATTTGATCTACATATCTAGAGAAAAGAGGCCAAAGCAGCCACATCATTTCAAGGCTGGTGCCATGAACGTTTTGGCAAGAGTCTCTGGGTTGATGACCAATGCTCCCTTTATGCTGAACGTGGATTGTGATATGATTGTAAACAATCCAAAGATTGTTCTGCATGGGTTGTGCGTTTTGCTTGATTCCAAAGGAGAAAAGGAAGTTGCATTTGCTCAATGTCCCCAACAATTCTATGCTGCACTCAAGGACGATCCCTTTGGAAATCAGCTGGTAATTTTGTTTAAGCACTTGGCAGCTGGATTAGCTGGAATCCAAGGACCTTTCTACGGAGGAACAAACTGCCTACATAGAAGAAAAGTTATTTACGGTCTCTCTCCAGATAACGTGGAGAATGGAAACAGCATGTCAGAGGAGGAATTAAAACAAAAATTTGGAGCTTCAAAGGAGGTTGTGAAATCAGCAGCTCATGCTTTGAAAGGGAGAACATATTCCCCTAATCATATTAATATTTCAAAGGCTGTTGAAGTAGCAAGCCAAGTTGCTGGTTATGGATATGAATATGGCACTGCCTGGGGCAAGCAGGTGGGTTGGAGGTATGGATCATTGACAGAGGATGTACTTACTGGGCTGAAAATACATGTAAAAGGTTGGAGATCAGAATTGTGTACACCGAACCCAATTGCATTCACAGGTTTTGCTCCAGGAGGTGGCCCAACTTCAATGGCCCAACAAAAGAGATGGGCCACAGGAGTTCTTGAGATCTTCTTTAGCAAGCACTGTCCTATTATTGGTACCCTTTTCCATAAGCTTACTTTGAGGGAATGCTTTGCTTATATGTGGATTACCAACTGGGGCTTGGGCCCAATCTTCGAAGTATCCTATGCTTGTCTCATTGCATATTGCATCATTACCAACTCCAATTTCTTGCCTCAGGACATGGGCATGTGTATTCCTGTGGCATGTTTCGTAATTTACGCAGTATATACTCTCTTGGAATACTTGGCAGCAGGGATGTCAATAAGAGAATGGTGGAATAATCAAAGGATGTCAAGAATAACACCCATGAACGCTGGCTTTTGTGCATTTCTTACTGTCATACTTAAGTTGTTGAGAATATCTAACACTGTGTTTGACATAACAAAGAAAGATGTACCATCACATGCAAGGGATGGTGGAGAGGATAAGGATGCTGGTAGGTATACCTTTGATGAGTCCCTAGTTTTTTTGCCAGGCACTACCATTTTGCTTATGCAATTGGTAGCAATTGTTATCAAGTTATTGGGGTTGCAACCAACTCATAGTGGAAATGGGTGTGGACTAGGTGAGATTTTCTGTAGTGTTTATTTGATAGTTTGCTATTGGCCATTTCTTAGAGGACTATTTGAGAGGGGAAAGTATAGAATTCCCTTGTCTACAGTGTGCAAATCAGCTATCTTGACATGTTTCTTTGTACACCTATGTAGAAAGAACAATGCTGGTTGA 2286 0.4204 MANQHSLFLYEKQWYKQNYKRVTDSLLLILLLLLLCYRVISVNYYSFPWFVALCCESWFTISWFFTLTTQWNPAIIETYPDRLLQSFDYALHAFCCWLVSFLNRVQELPAVDLFVTTADPMLEPPIITVNTVLSLLALDYPAHKLACYVSDDGCSPLTFYALQEASEFAKFWVPFCKKYEVQVRAPFRYFSDEPEASKANNIPEFRQEWLRTKDMYDLLSRRIELEASRKCRLDGEFAVFSNTEKTNHPTIIKVLWENKECLADGLPHLIYISREKRPKQPHHFKAGAMNVLARVSGLMTNAPFMLNVDCDMIVNNPKIVLHGLCVLLDSKGEKEVAFAQCPQQFYAALKDDPFGNQLVILFKHLAAGLAGIQGPFYGGTNCLHRRKVIYGLSPDNVENGNSMSEEELKQKFGASKEVVKSAAHALKGRTYSPNHINISKAVEVASQVAGYGYEYGTAWGKQVGWRYGSLTEDVLTGLKIHVKGWRSELCTPNPIAFTGFAPGGGPTSMAQQKRWATGVLEIFFSKHCPIIGTLFHKLTLRECFAYMWITNWGLGPIFEVSYACLIAYCIITNSNFLPQDMGMCIPVACFVIYAVYTLLEYLAAGMSIREWWNNQRMSRITPMNAGFCAFLTVILKLLRISNTVFDITKKDVPSHARDGGEDKDAGRYTFDESLVFLPGTTILLMQLVAIVIKLLGLQPTHSGNGCGLGEIFCSVYLIVCYWPFLRGLFERGKYRIPLSTVCKSAILTCFFVHLCRKNNAG* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1176 761 Pfam Cellulose synthase 111 400 IPR005150 GO:0016020|GO:0016760|GO:0030244
Apr3g1176 761 Pfam Glycosyl transferase family group 2 456 566 IPR001173 -
Apr3g1176 761 SUPERFAMILY Nucleotide-diphospho-sugar transferases 126 527 IPR029044 -
Apr3g1176 761 PANTHER CELLULOSE SYNTHASE H1-LIKE PROTEIN 2 758 - -
Apr3g1176 761 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 758 - -
Apr3g1176 761 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 103 213 IPR029044 -
Apr3g1176 761 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 239 396 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1176 Apr-Chr3 26287449 26293787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1176 9 752 Glycosyltransferase AT2G32530 44.863 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1176 - - gmx:100500469 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1176 3 26287449 26293787 Apr3g1176 3 26287449 26293787 ECH
Apr2g2033 2 25664406 25669081 Apr3g1176 3 26287449 26293787 PCT
Apr3g1176 3 26287449 26293787 Apr2g2034 2 25673499 25684150 PCT