Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2411 ATGTTTTCGGGTGTGACGGGGTTGATCCATAGGGGTCACAAGATAAAAGGAACAGTGGTGTTGATGAGAAAGAATGTGTTGGATGTCAATAGCATAACGAGTGTTGGGGGAGTTATTGGGCAAGGTCTTGACATTGTTGGTTCTGCACTCGATACTCTCACTGCCTTCTTGGGTCGATCCGTTTCTCTTCAGTTGATTAGTGCAACCAAAGCTGGTGCCAATGGAAAAGGAAAACTTGGAAAGCCTACTTTTTTGGAAGGGATCATATCTTCATTACCAACTTTGGGAGCAGGCCAATCGGCATTCAGAATTCATTTTGAATGGGATGATGACATTGGAATTCCTGGAGCATTTTATATCAAAAACTTTATGCAAACTGAGTTCTTCCTTGTGAGTTTGACTCTTGAAGACATTCCAAATCATGGAAGCATCTACTTTGCTTGCAATTCATGGATTTATAATGCCAAACACTATAAAAGTGATCGCATTTTCTTTGCTAACCAGACATATCTTCCAAGTGAAACACCAGCTCCATTAGCTAAGTATAGAGAAGAAGAGTTGCAGAATTTAAGAGGAGATGGAACAGGAGAACGCAAAGAATGGGATAGGATTTATGATTATGATGTCTACAATGATTTGGGAGATCCAGACAAAGGTGAAAATCATGCACGTCCTGTTCTTGGAGGGTCTAGCACCTATCCTTATCCTCGCAGGGGAAGAACTGGTAGAAGACCAACAAGAAAAGATCCTAATAGCGAGAGTAGGAGCAATGATGTTTATCTCCCAAGAGATGAAGCTTTTGGTCACTTGAAGTCATCTGACTTCCTTACTTATGGATTGAAATCTTTATCTCAAAATGTTATCCCAGCTTTGCAATCTGTATTTTTTGACTTGAATTTCACACCCAATGAGTTTGATAGCTTTGATGAAGTTCATGGACTCTATGAGGGTGGAATTAAGTTGCCGACAAATATACTTAGCCAGATTAGTCCATTACCTGTGCTCAAGGAAATCCTTAGAACTGATGGAGAACAAGCCCTCAAGTTTCCTCCTCCCAAAGTAATTGAAGTGAGTAGGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCAAACATGATTCGTTGCCTTCAGGAGTTTCCACCACGAAGCAAGCTGGATAGTCAAGTCTACGGTGATCACACTAGTCAGATAACCATAGAACACCTCGAGCCTAACTTAGAAGGGCTCACTGTTGATGAGGCAATCCGAAACAAGAGACTTTTCCTACTAGATCATCATGACTCAATCATGCCATATTTAAGGCGAATAAACTCAACCTCCACAAAAGCTTATGCAACTAGAACCATTCTCTTCTTGAACGGTGATCGAAATTTAAGGCCACTTGCCATAGAGTTGAGTTTGCCACATCCTCAAGGAGATCAATCTGGTGCTGTTAGTCAAGTTTATCTACCTGCAGATCAAGGAGTTGAAAGTACTATTTGGCTACTAGCTAAGGCTTATGTAGTCGTGAATGATTCGTGCTATCATCAACTTGTCAGCCATTGGTTAAATACTCATGCAGTTGTTGAACCATTCATCATAGCAACAAACAGGCATCTCAGTGTTGTTCACCCAATTTATAAACTCCTATACCCTCACTATCGTGACACCATGAATATAAATGCCCTTGCTCGACAATCCCTGGTCAATGATGGTGGTATCATAGAACAAACATTTTTGTGGGGAAGGTACTCTATGGAAATGTCTGCTGTAATTTACAAGAATTGGGTTTTCCCTGATCAAGCATTACCTGCTGATCTTTTGAAAAGAGGAATGGCAGTTGAGGATCCATCTTCCCCTCATGGCATTCGCCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTCAAAGATTATGTTGGCTTGTACTACACATCAGATGACATACTTAGACAAGATTCTGAGCTCCAAGCATGGTGGAAAGAACTAGTAGAGGTGGGTCATGGTGACAAGAAAAATGAGCATTGGTGGCCTAAGATGCAAACTCGTGAAGATCTAGTTGGATCTTGCACCATCCTCATATGGACTGCTTCAGCACTTCACGCAGCCGTTAATTTTGGACAATATCCTTATGGAGGTTTAATCTTGAACCGTCCAACTCTTAGTAGACGATTCATGCCTGAGAAAGGTTCTGCTGAGTATGAAGAGCTAATCAAGAGCCCACAAAAGGCTTACTTGAAGACAATTACACCAAAGCTTCAGACCCTTATTGATCTTTCTGTTATAGAAATCTTGTCAAGGCATGCTTCTGATGAGCTGTACCTTGGTGAAAGGGACAATCCAAATTGGACATCTGATACAAAGGCATTAGAGGCATTCAAGAAGTTTGGAAACAAGCTGGCAGAAATTGAGCAAAAACTCTCACACAGAAACAATGATGAGAAGCTGAGAAATCGTCATGGACCAGTTCAGATGGCTTATACTTTGCTTTTTCCTTCTAGTGAGGGAGGATTAACTTTTAGAGGAATCCCCAATAGTATCTCTATATGA 2586 0.4111 MFSGVTGLIHRGHKIKGTVVLMRKNVLDVNSITSVGGVIGQGLDIVGSALDTLTAFLGRSVSLQLISATKAGANGKGKLGKPTFLEGIISSLPTLGAGQSAFRIHFEWDDDIGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIYFACNSWIYNAKHYKSDRIFFANQTYLPSETPAPLAKYREEELQNLRGDGTGERKEWDRIYDYDVYNDLGDPDKGENHARPVLGGSSTYPYPRRGRTGRRPTRKDPNSESRSNDVYLPRDEAFGHLKSSDFLTYGLKSLSQNVIPALQSVFFDLNFTPNEFDSFDEVHGLYEGGIKLPTNILSQISPLPVLKEILRTDGEQALKFPPPKVIEVSRSAWMTDEEFAREMLAGVNPNMIRCLQEFPPRSKLDSQVYGDHTSQITIEHLEPNLEGLTVDEAIRNKRLFLLDHHDSIMPYLRRINSTSTKAYATRTILFLNGDRNLRPLAIELSLPHPQGDQSGAVSQVYLPADQGVESTIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLYPHYRDTMNINALARQSLVNDGGIIEQTFLWGRYSMEMSAVIYKNWVFPDQALPADLLKRGMAVEDPSSPHGIRLVIEDYPYAVDGLEIWDAIKTWVKDYVGLYYTSDDILRQDSELQAWWKELVEVGHGDKKNEHWWPKMQTREDLVGSCTILIWTASALHAAVNFGQYPYGGLILNRPTLSRRFMPEKGSAEYEELIKSPQKAYLKTITPKLQTLIDLSVIEILSRHASDELYLGERDNPNWTSDTKALEAFKKFGNKLAEIEQKLSHRNNDEKLRNRHGPVQMAYTLLFPSSEGGLTFRGIPNSISI* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2411 861 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 6 861 - -
Apr2g2411 861 PRINTS Plant lipoxygenase signature 136 154 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 162 183 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 201 217 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 234 253 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 302 323 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 347 363 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 386 405 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 452 476 IPR001246 GO:0016491
Apr2g2411 861 PRINTS Plant lipoxygenase signature 774 788 IPR001246 GO:0016491
Apr2g2411 861 Pfam PLAT/LH2 domain 73 165 IPR001024 GO:0005515
Apr2g2411 861 SMART LH2_4 13 167 IPR001024 GO:0005515
Apr2g2411 861 Pfam Lipoxygenase 179 844 IPR013819 GO:0016702|GO:0046872
Apr2g2411 861 ProSitePatterns Lipoxygenases iron-binding region signature 1. 517 531 IPR020833 GO:0016702|GO:0046872
Apr2g2411 861 PANTHER LIPOXYGENASE 6 861 IPR000907 GO:0016702|GO:0046872
Apr2g2411 861 Gene3D - 495 860 - -
Apr2g2411 861 ProSiteProfiles PLAT domain profile. 39 166 IPR001024 GO:0005515
Apr2g2411 861 SUPERFAMILY Lipoxigenase 171 861 IPR036226 -
Apr2g2411 861 MobiDBLite consensus disorder prediction 245 260 - -
Apr2g2411 861 Gene3D - 360 494 - -
Apr2g2411 861 Gene3D PLAT/LH2 domain 4 170 - -
Apr2g2411 861 Gene3D - 171 270 - -
Apr2g2411 861 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 170 IPR036392 GO:0005515
Apr2g2411 861 CDD PLAT_LH2 13 167 IPR042057 -
Apr2g2411 861 MobiDBLite consensus disorder prediction 215 260 - -
Apr2g2411 861 Gene3D - 271 359 IPR027433 -
Apr2g2411 861 ProSitePatterns Lipoxygenases iron-binding region signature 2. 544 554 IPR020834 GO:0016702|GO:0046872
Apr2g2411 861 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 169 861 IPR013819 GO:0016702|GO:0046872
Apr2g2411 861 PRINTS Lipoxygenase signature 499 516 IPR013819 GO:0016702|GO:0046872
Apr2g2411 861 PRINTS Lipoxygenase signature 517 534 IPR013819 GO:0016702|GO:0046872
Apr2g2411 861 PRINTS Lipoxygenase signature 537 557 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2411 Apr-Chr2 28724153 28728215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2411 14 861 Acyl Lipid Metabolism Gene Families AT1G55020 61.047 0.0 1087
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2411 K15718 - gmx:547869 1551.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2411 2 28724153 28728215 Apr10g1027 10 22650312 22655330 PCT
Apr10g1029 10 22680090 22684835 Apr2g2411 2 28724153 28728215 PCT