Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1029 ATGCTTCCGATCTTTGGCAATAAGGGTCAGAAGATAAAGGGGACAGTGGTGTTGATGCCCAAAAATGTTTTGGACTTCAACGCCATCACTTCAAGTGCCATTGACGCTGCTACTGCCTTCTTAGGAAGCAGCGTTTCCATAAAGTTGATCAGTGCTACCAAAACTGATTCAAACGGAAATGGGAAAGTTGGAAAAGAAGCGTATTTGAATAAACACCTTCCGACGTTACCAACGTTGGGAGCAAGACAAGATGCATTCAGTGTTCATTTTGAATGGAATGCTGATTTTGGAATTCCAGGAGCATTTTACATTAATAATTATATGACTGATGAGTTCTTCCTCGTTAGTGTCACTCTTGAGGACATTCCAAACCATGGAACCATTCACTTTGTTTGTAACTCATGGGTTTACAACTTTAAAAGTTACAACAAAAAGGAGCGTATTTTCTTCGACCATAACACATATATTCCAAGTGCAACACCATCTCCTCTAGTAAAGTACAGGGAAGAAGAGTTGCAAAATTTAAGAGGAGATGGAAAAGGGGTGCGCCAACCATATGATAGGATCTATGATTATGATGTGTATAATGATTTGGGCAATCCAGATAGTGGTGAAAAGTATGCTCGTCCAATCCTTGGAGGGTCTAGCACTCATCCTTACCCTCGCAGGGTTAGAACTGGTAGAAAACCCACAAGGAAAGATCCTAACAGTGAGCAACCGGGGGAGGTTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTTCTGACATATGGAATAAAATCTTTATCTCAGAACGTCTTGCCAGCGTTACAATCCGTGATTTTTGACTTAAATTTCACACCAAATGAGTTTGATAGCTTCGATGAAGTGCGTAGCCTCTATGAAGGTGGAATTAAGCTGCCAACAAATATACTTAGCCAAATTAGTCCCATACCAGCCCTCTCCGAATTGTTCCGCAGCGATGGTGAAAATGTCCTTCAATTTCCACCACCCCATGTAATCCAAGTTAGCAAGTCTGCTTGGATGACTGATGATGAATTTGCTAGGGAGATGATTGCTGGGGTTAACCCTTGTGTGATTCGCCGTCTTCAAGAGTTCCCCCCACAAAGCACTCTAGATCCCACACTCTACGGTGATCAAACTAGCACAATAACAAAAGAACAATTGGAGATTAACATGGGTGGGGTCACAGTGGATCAGGCAATCGGGAGTCTCAGATTATTCATATTAGATTACCAAGATGCATTCATGCCATTTTTGACCAAGATCAATAGCTTACCTTCTGCAAAGGCTTATGCCACAAGAACAATCTTGTTTTTGAAAGATGATGGGACTTTGAAACCACTTGCTATCGAATTAAGTAAGCCACATCCAAATGGAGTTCAATTTGGTGCTGAGAGTAAAGTGGTGTTGCCTGCTAACGAAGGTGTTGAAAGTACAATTTGGCTATTAGCTAAGGCTCATGTTATAGTAAATGACTCTGGCTATCATCAGCTCATGAGCCATTGGTTAAATACTCATGCAGTAATGGAGCCATTTGTCATAGCAACCAATAGGAATCTCAGTGTAGTTCACCCAATTTATAAGCTTCTACTTCCTCACTATCGTGACACCATAAATATCAATGGACTCGCTAGGCAATCACTGATTAATGCAGGTGGCATTATAGAGCAATCATTTTTGCCTGGACCATACTCTATTGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACTGACCAAGCATTACCCGCTGATCTCATCAAGAGAGGACTGGCAGTTGAGGATCCCACTGCCCCACATGGCCTTCGTCTTGTAATTGAAGACTACCCTTATGCTGTTGATGGACTAGAAATATGGGATGCTATTAAGACATGGGTCAAAGAATATGTCTCCTTGTATTACCCTTCAGATGTAGCAGTTCAACAGGATACGGAACTGCAAGCTTGGTGGAAAGAAGCTGTAGAAAAGGGTCATGCAGACTTGAAAGATAAGCCATGGTGGCCTAGGATGCAAACGCTTGAAGACCTTATTCGTTCCTGTTCTATAATTATATGGACTGGTTCAGCTCTCCATGCAGCTGTTAATTTTGGACAATATCCTTATGGAGGTTATATCCTGAACCGTCCAACTATTAGCAGAAGATTTATCCCAGAACCAGGAACTAAAGAATATGATGAGATGGTGAAGAGTCCTCAAAAAGCTTATCTGAGAACAATCACACCAAAGTACCAAACCCTTGTTGACCTCTCAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATTTACCTTGGAGAGAGGGAAAATCCAGATTTTTGGACATCTGATTCAAGGGCAAAAGAAGCCTTTAAAAGGTTTGGTAGCAAGCTCTCAGAAATTGAGGGGAAAATCACAGGAAGGAACAATGATTCAAGTCTGAGAAACCGATATGGGCCAATTAAGTTGCCATACACATTGCTCCATCGTTCTAGTAATGAAGGGTTGACTTTCAAAGGAATTCCCAATAGTATTTCTATCTAG 2544 0.4119 MLPIFGNKGQKIKGTVVLMPKNVLDFNAITSSAIDAATAFLGSSVSIKLISATKTDSNGNGKVGKEAYLNKHLPTLPTLGARQDAFSVHFEWNADFGIPGAFYINNYMTDEFFLVSVTLEDIPNHGTIHFVCNSWVYNFKSYNKKERIFFDHNTYIPSATPSPLVKYREEELQNLRGDGKGVRQPYDRIYDYDVYNDLGNPDSGEKYARPILGGSSTHPYPRRVRTGRKPTRKDPNSEQPGEVYVPRDENFGHLKSSDFLTYGIKSLSQNVLPALQSVIFDLNFTPNEFDSFDEVRSLYEGGIKLPTNILSQISPIPALSELFRSDGENVLQFPPPHVIQVSKSAWMTDDEFAREMIAGVNPCVIRRLQEFPPQSTLDPTLYGDQTSTITKEQLEINMGGVTVDQAIGSLRLFILDYQDAFMPFLTKINSLPSAKAYATRTILFLKDDGTLKPLAIELSKPHPNGVQFGAESKVVLPANEGVESTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVMEPFVIATNRNLSVVHPIYKLLLPHYRDTININGLARQSLINAGGIIEQSFLPGPYSIEMSSAVYKNWVFTDQALPADLIKRGLAVEDPTAPHGLRLVIEDYPYAVDGLEIWDAIKTWVKEYVSLYYPSDVAVQQDTELQAWWKEAVEKGHADLKDKPWWPRMQTLEDLIRSCSIIIWTGSALHAAVNFGQYPYGGYILNRPTISRRFIPEPGTKEYDEMVKSPQKAYLRTITPKYQTLVDLSVIEILSRHASDEIYLGERENPDFWTSDSRAKEAFKRFGSKLSEIEGKITGRNNDSSLRNRYGPIKLPYTLLHRSSNEGLTFKGIPNSISI* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1029 847 Gene3D PLAT/LH2 domain 4 155 - -
Apr10g1029 847 PRINTS Plant lipoxygenase signature 120 138 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 147 168 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 186 202 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 219 238 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 286 307 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 331 347 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 370 389 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 437 461 IPR001246 GO:0016491
Apr10g1029 847 PRINTS Plant lipoxygenase signature 759 773 IPR001246 GO:0016491
Apr10g1029 847 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 154 847 IPR013819 GO:0016702|GO:0046872
Apr10g1029 847 MobiDBLite consensus disorder prediction 205 248 - -
Apr10g1029 847 PRINTS Lipoxygenase signature 484 501 IPR013819 GO:0016702|GO:0046872
Apr10g1029 847 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
Apr10g1029 847 PRINTS Lipoxygenase signature 522 542 IPR013819 GO:0016702|GO:0046872
Apr10g1029 847 ProSitePatterns Lipoxygenases iron-binding region signature 1. 502 516 IPR020833 GO:0016702|GO:0046872
Apr10g1029 847 ProSitePatterns Lipoxygenases iron-binding region signature 2. 529 539 IPR020834 GO:0016702|GO:0046872
Apr10g1029 847 SUPERFAMILY Lipoxigenase 156 847 IPR036226 -
Apr10g1029 847 PANTHER LIPOXYGENASE 20 847 IPR000907 GO:0016702|GO:0046872
Apr10g1029 847 SMART LH2_4 10 152 IPR001024 GO:0005515
Apr10g1029 847 Pfam PLAT/LH2 domain 48 150 IPR001024 GO:0005515
Apr10g1029 847 ProSiteProfiles PLAT domain profile. 22 150 IPR001024 GO:0005515
Apr10g1029 847 Gene3D - 344 479 - -
Apr10g1029 847 Gene3D - 480 846 - -
Apr10g1029 847 Gene3D - 255 343 IPR027433 -
Apr10g1029 847 CDD PLAT_LH2 11 150 IPR042057 -
Apr10g1029 847 Gene3D - 156 254 - -
Apr10g1029 847 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 155 IPR036392 GO:0005515
Apr10g1029 847 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 20 847 - -
Apr10g1029 847 Pfam Lipoxygenase 164 829 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1029 Apr-Chr10 22680090 22684835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1029 10 847 Acyl Lipid Metabolism Gene Families AT1G55020 56.874 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1029 K15718 - gmx:547856 1412.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1029 10 22680090 22684835 Apr10g1029 10 22680090 22684835 ECH
Apr10g1029 10 22680090 22684835 Apr2g2411 2 28724153 28728215 PCT