Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g1027 ATGTTTTCAGGGGTTGCAGGTCTTATAAACAGGGGGCACAAAGTGAAGGGTACAGTGGTTTTGATGCAAAAGAATGTGTTGGACATAAACGCACTTACCTCTGCTCAATCCGCAACTGGTATCATCGGCGGTGCCATCGGGATCGTCGGTGGCGCCATTGGCACCGCCGTTGACACCCTCACTTCCTTTTTGGGCCGATCTGTCGCTCTTAAGCTCATTAGTGCCACCGCTGCTGATGGATCTGGAAAAGGAAAAGTGGGAAAGCAAACTTTTTTGGAGGGTATTGTTACCTCTCTAGCAACTTTGGGAGCAGGCCAATCTGCATTCAATATCCATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCATTTTATATTGAGAATTTTATGCAAGTTGAATTCTACCTTGTCAGTTTGACTCTTGAAGACATCCCTAACCATGGCACCGTTCACTTTCTTTGCAATTCATGGGTTTACAATTCAAAGAAGTATAAAAGTGATCGCATTTTCTTTGCCAACAAGACATACCTCCCAAGTGAAACACCAGCTCCATTAGTCAAGTATAGAGAAGAAGAATTGAAGGTTTTACGAGGAGATGGAACAGGAGAGCGCAAAGAACATGAAAGGATTTATGATTATGATGTCTACAATGATTTGGGTGAACCTGACTCAAAGGCTAGTCTGGCTCGTCCAGTTCTTGGAGGAAACAGTACCTTACCTTATCCTCGCAGGGGAAGAACTGGCAGAAAACCATCTAAGAAAGATCCTAAAAGTGAGAGTCGCAGCGATTCTGTTTACCTACCAAGAGATGAATCATTTGGTCACTTAAAGTCATCGGATTTTCTTGTTTATATACTTAAATCTGCTTCCCAAAATGTTATACCTCAATTGCAATCTGCACTCAAATTGCAAATTAATCAGCCTGAGTTTAATAGCTTTGATGAAGTGCGTGGACTCTATGATGGTGGAATTAAGTTACCTACTAATGTACTTAGCCAGATTAGCCCTATTCCTTTATTCACAGAACTTTTCCGAACTGATGGTGAACAAGTCCTTAAGTTTCCACCACCTAAAGTGATTCAAGTGAATCAATCTGGATGGATGACTGACGAAGAATTTGCAAGAGAGATGATTGCTGGTGTAAATCCACACATTATTAAAAGACTTCAGGAATTCCCGCCAAAGAGCAGGCTAGATAGCCAATTGTATGGTGATAACACTAGCACCATAACCAAAGAACACTTGGAGCCAAACATGGGTGGGCTCACTGTAGAACAGGCTATCCAGAGTAACAAATTGTTCATACTAGACCACCACGACACACTCATTCCATATTTGAGGCGAATAAATTCAACTGACACAAAGGCCTATGCTACTCGGACCTTCCTTTTGTTGCAAGATAATGGAACCTTAAAGCCATTGGCCATTGAGCTAAGTAGGCCACATCCTCAGGGTGATAATTTTGGTCCTATTAGTAACGTTTACCTTCCAGCAAGCCAAGGTGTTGAAGCTTCCATTTGGCTTCTTGCCAAGGCTTATGTAGTTGTAAATGACTCTTGCTATCACCAACTTGTCAGCCATTGGTTGAACACTCATGCAGTTGTTGAGCCATTTATCATAGCAACAAACAGGCATCTTAGTGTGGTTCACCCTATTTACAAACTTCTGTTTCCACACTATCGTGACACAATGAACATCAACGCACTTGCAAGGAATGTCCTAGTCAATGCTGAGGGTATCATAGAATCAACATTCTTGTGGGGTGGCTTTTCTTTGGAAATGTCAGCTGTTGTATACAAGGATTGGGTTTTCACTGAGCAAGCACTACCTGCTGATCTTGTCAAGAGAGGAGTGGCTGTTGAAGATCCATCTTCTCCTCATGGCCTTCGTCTTTTGATAGAGGACTATCCTTATGCTGCTGATGGGCTAGAGATTTGGGCTGCCATCAGATCATGGGTTCAAGAATATGTCTTTTTCTACTACAAATCAGATGCTGCTGTTGCACAAGATACTGAACTCCAAGCCTTTTGGAAAGAGCTTGTAGAGGTTGGTCATGGTGACAAGAAACATGAATCATGGTGGCCAAGGATGCAAACACGTGAAGAGTTGATCCATTTTTGCACCATCCTCATATGGACTGCTTCAGCCCTTCATGCAGCTGTTAATTTTGGACAGTATCCATATGGTGGTTATATTCTTAACCGACCAACACTTAGTAGGAGATTCATGCCTGAGATAGGGTCCCCTGAGTATGATGAGCTTGCTAAGAACCCTCAGAAGGTGTTTTTGAGAACAATTACAGGGAAGAATGATGCCCTTAAAGATCTTACAATTATAGAGGTCCTATCAAGACATGCTTCTGATGAGTTATACCTTGGACAAAGAGATGGTGGTGACTTATGGACTTCTGATACACAACCATTAGAGGCATTCAAGAGGTTTGGTCAAAAACTAGCTGAAATTGAGAAAAAGCTCATTCAAAGGAACAACGATGAGACACTGAGGAACCGATATGGCCCAGTGCAGATGCCTTACACTTTGCTTTATCCTTCAAGTGAGGAAGGGTTGACTTGCAGAGGCATTCCTAATAGTATCTCCATTTGA 2607 0.4239 MFSGVAGLINRGHKVKGTVVLMQKNVLDINALTSAQSATGIIGGAIGIVGGAIGTAVDTLTSFLGRSVALKLISATAADGSGKGKVGKQTFLEGIVTSLATLGAGQSAFNIHFEWDSDMGIPGAFYIENFMQVEFYLVSLTLEDIPNHGTVHFLCNSWVYNSKKYKSDRIFFANKTYLPSETPAPLVKYREEELKVLRGDGTGERKEHERIYDYDVYNDLGEPDSKASLARPVLGGNSTLPYPRRGRTGRKPSKKDPKSESRSDSVYLPRDESFGHLKSSDFLVYILKSASQNVIPQLQSALKLQINQPEFNSFDEVRGLYDGGIKLPTNVLSQISPIPLFTELFRTDGEQVLKFPPPKVIQVNQSGWMTDEEFAREMIAGVNPHIIKRLQEFPPKSRLDSQLYGDNTSTITKEHLEPNMGGLTVEQAIQSNKLFILDHHDTLIPYLRRINSTDTKAYATRTFLLLQDNGTLKPLAIELSRPHPQGDNFGPISNVYLPASQGVEASIWLLAKAYVVVNDSCYHQLVSHWLNTHAVVEPFIIATNRHLSVVHPIYKLLFPHYRDTMNINALARNVLVNAEGIIESTFLWGGFSLEMSAVVYKDWVFTEQALPADLVKRGVAVEDPSSPHGLRLLIEDYPYAADGLEIWAAIRSWVQEYVFFYYKSDAAVAQDTELQAFWKELVEVGHGDKKHESWWPRMQTREELIHFCTILIWTASALHAAVNFGQYPYGGYILNRPTLSRRFMPEIGSPEYDELAKNPQKVFLRTITGKNDALKDLTIIEVLSRHASDELYLGQRDGGDLWTSDTQPLEAFKRFGQKLAEIEKKLIQRNNDETLRNRYGPVQMPYTLLYPSSEEGLTCRGIPNSISI* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g1027 868 Pfam PLAT/LH2 domain 80 172 IPR001024 GO:0005515
Apr10g1027 868 PANTHER LINOLEATE 9S-LIPOXYGENASE-4 7 868 - -
Apr10g1027 868 CDD PLAT_LH2 13 174 IPR042057 -
Apr10g1027 868 Gene3D - 178 277 - -
Apr10g1027 868 PANTHER LIPOXYGENASE 7 868 IPR000907 GO:0016702|GO:0046872
Apr10g1027 868 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
Apr10g1027 868 SUPERFAMILY Lipoxigenase 178 868 IPR036226 -
Apr10g1027 868 Gene3D - 367 500 - -
Apr10g1027 868 SMART LH2_4 13 174 IPR001024 GO:0005515
Apr10g1027 868 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Apr10g1027 868 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Apr10g1027 868 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Apr10g1027 868 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 868 IPR013819 GO:0016702|GO:0046872
Apr10g1027 868 Gene3D PLAT/LH2 domain 4 177 - -
Apr10g1027 868 MobiDBLite consensus disorder prediction 227 267 - -
Apr10g1027 868 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Apr10g1027 868 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Apr10g1027 868 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
Apr10g1027 868 Pfam Lipoxygenase 186 851 IPR013819 GO:0016702|GO:0046872
Apr10g1027 868 Gene3D - 278 366 IPR027433 -
Apr10g1027 868 Gene3D - 501 867 - -
Apr10g1027 868 ProSiteProfiles PLAT domain profile. 42 173 IPR001024 GO:0005515
Apr10g1027 868 MobiDBLite consensus disorder prediction 253 267 - -
Apr10g1027 868 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 177 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g1027 Apr-Chr10 22650312 22655330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g1027 1 868 Acyl Lipid Metabolism Gene Families AT1G55020 56.821 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g1027 K15718 - gmx:100816880 1576.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1027 10 22650312 22655330 Apr10g1027 10 22650312 22655330 ECH
Apr2g2411 2 28724153 28728215 Apr10g1027 10 22650312 22655330 PCT