Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g2040 ATGGGTAGGAGCTCAACCTGTGTGTCTCTTACTGCAATTCAGATTATTCTTCTTGCTTCTATACCCTTCACACTATCCCAACCCTCTTTCCTGGGGAAGGATGGGAGTGGCGATTTGGTAGACCAAATATGCCAAAAGACACCCTTTTATGACCTTTGCAGCTCAATCCTACATTCAAACCCTCTAAGCCCAAAAACTGATCTTAAAGGGGTGGCTCTCTTAATGGTCAACAACATTGTGGCAAATGCAACTGACACACTGAGTTACATTGAGGGGTTGATCAAGCAAACCTCAGATCGTGAGTTGGAACAAGCCTTGGCTTTCTGTGCCGAGTCATATATCCCAGTTGTCAAATACATTCTCCCACAAGCAGCTGATGCCATAAGCCAAAGCCGTTTTGGCTTTGCCAGTTACTGCATATCTGATGCTGTCAAAGAAGTGAGTAGTTGTGACAAAAAATTCAATGGCTCAAATCATTCACCATTAGGGGACAGAAACGACATTGTGCAGAAGCTAGTGGATGTGGCTTCTGCTATAATCAAACTACTACTTAAGGGGTGA 561 0.4385 MGRSSTCVSLTAIQIILLASIPFTLSQPSFLGKDGSGDLVDQICQKTPFYDLCSSILHSNPLSPKTDLKGVALLMVNNIVANATDTLSYIEGLIKQTSDRELEQALAFCAESYIPVVKYILPQAADAISQSRFGFASYCISDAVKEVSSCDKKFNGSNHSPLGDRNDIVQKLVDVASAIIKLLLKG* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g2040 186 Pfam Plant invertase/pectin methylesterase inhibitor 38 179 IPR006501 GO:0004857
Apr1g2040 186 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 11 186 - -
Apr1g2040 186 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 184 IPR035513 -
Apr1g2040 186 SMART PMEI_2 35 179 IPR006501 GO:0004857
Apr1g2040 186 TIGRFAM PME_inhib: pectinesterase inhibitor domain 15 183 IPR006501 GO:0004857
Apr1g2040 186 CDD CIF_like 38 183 IPR034087 GO:0004857|GO:0043086
Apr1g2040 186 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 183 IPR035513 -
Apr1g2040 186 PANTHER PECTINESTERASE INHIBITOR-LIKE 11 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g2040 Apr-Chr1 29944091 29944807 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g2040 - - gmx:100527840 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g2040 1 29944091 29944807 Apr1g2040 1 29944091 29944807 ECH
Apr9g2332 9 30953401 30954141 Apr1g2040 1 29944091 29944807 PCT
Apr1g2040 1 29944091 29944807 Apr9g2333 9 30958925 30959485 PCT