Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1776 ATGTTCGATTCCAATTACTCTTCCAATTTCATCATGGCCAAAACCTCCTTCAAACTTCAACATCCTTTGGAGAGAAGGCAGGCTGAAGCTACTCGCATTAGAGAGAAGTATCCTGATAGAATACCTGTGATTGTGGAGAAAGCTGAAAGAAGTGATATTCCAGACATTGATAAGAAGAAATACCTTGTCCCAGCTGATTTGACTGTTGGCCAGTTTGTTTATGTTGTTCGCAAAAGGATTAAGCTCAGTGCAGAGAAGGCTATTTTTGTTTTCATCAATAACACTCTACCACCAACTGCTGCATTGATGTCTGCTATTTATGAGGAAAATAAGGATCAAGATGGTTTTCTTTACATGACTTATAGTGGAGAGAACACCTTCGGATCCCATTAG 393 0.3944 MFDSNYSSNFIMAKTSFKLQHPLERRQAEATRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFINNTLPPTAALMSAIYEENKDQDGFLYMTYSGENTFGSH* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1776 130 CDD Ubl_ATG8 23 125 - -
Apr1g1776 130 PANTHER AUTOPHAGY-RELATED PROTEIN 10 128 - -
Apr1g1776 130 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 10 128 IPR004241 -
Apr1g1776 130 Pfam Autophagy protein Atg8 ubiquitin like 25 128 IPR004241 -
Apr1g1776 130 SUPERFAMILY Ubiquitin-like 14 128 IPR029071 -
Apr1g1776 130 Gene3D - 3 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1776 Apr-Chr1 27499783 27502261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1776 K08341 - gmx:100527884 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1776 1 27499783 27502261 Apr1g1776 1 27499783 27502261 ECH
Apr2g2020 2 25544069 25546159 Apr1g1776 1 27499783 27502261 ECH
Apr3g1161 3 26171440 26174280 Apr1g1776 1 27499783 27502261 ECH