Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1161 ATGGCTAAGAGTTCATTCAAGATGGAACACCCACTTGAAAGGAGACAGGCTGAAGCAGCTCGCATTAGGGAGAAGTATCCTGATAGAATTCCAGTAATTGTTGAAAGGGCAGAGAAGAGTGATGTTCCCGAAATTGATAAGAAAAAGTATCTTGTTCCTGCTGATTTGACTGTTGGCCAGTTTGTGTATGTGGTGCGGAAGAGAATCAAGCTGAGTCCTGAGAAAGCCATCTTCATTTTTGTCAAGAACATTTTACCACCAACTGCGGCAATGATGTCTTCAATTTATGAGGAAAATAAGGATGAAGATGGATTCCTATATATGACTTATAGTGGAGAGAACACATTTGGTTTTATGATCTGA 363 0.3994 MAKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKSDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAMMSSIYEENKDEDGFLYMTYSGENTFGFMI* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1161 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Apr3g1161 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Apr3g1161 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 118 - -
Apr3g1161 120 CDD Ubl_ATG8 12 114 - -
Apr3g1161 120 Gene3D - 1 118 - -
Apr3g1161 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 118 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1161 Apr-Chr3 26171440 26174280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1161 K08341 - gmx:100301895 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1161 3 26171440 26174280 Apr3g1161 3 26171440 26174280 ECH
Apr3g1161 3 26171440 26174280 Apr1g1776 1 27499783 27502261 ECH