Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2020 ATGACTAAGAGTTCATTTAAGATGGAACATCCCCTTGAAAGGAGGCAGGCTGAAGCTGCTCGTATAAGAGAAAAGTATCCTGATAGAATTCCAGTAATTGTTGAAAGGGCTGAGAAGTGTGATGTTCCTGATATTGATAAGAAAAAGTATCTGGTTCCTGCTGATCTAACCGTAGGTCAGTTTGTGTACGTGGTGCGAAAGAGAATCAAACTGAGTTCCGAGAAGGCCATCTTCATTTTTGTGAAGAACATTTTACCACCAACAGCGGCTATAATGTCTGCATTATATGAGGAGAATAAAGATGATGATGGATTCTTGTATATGACTTTCAGCGGGGAGAACACATTTGGGTTGTTGATGTGA 363 0.4022 MTKSSFKMEHPLERRQAEAARIREKYPDRIPVIVERAEKCDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLSSEKAIFIFVKNILPPTAAIMSALYEENKDDDGFLYMTFSGENTFGLLM* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2020 120 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
Apr2g2020 120 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Apr2g2020 120 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Apr2g2020 120 CDD Ubl_ATG8 12 114 - -
Apr2g2020 120 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Apr2g2020 120 Gene3D - 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2020 Apr-Chr2 25544069 25546159 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2020 K08341 - han:110942091 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2020 2 25544069 25546159 Apr2g2020 2 25544069 25546159 ECH
Apr2g2020 2 25544069 25546159 Apr1g1776 1 27499783 27502261 ECH