Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0411 ATGATGGTAGAAAACGCTTCCAGAGCAAACCTTAGCTACCGTCGAGATTATGACATTGAGGAGGACTCCATAGATGGTGTGCCGTTACAAACTAACTCTGAATACTACGACGATGATGGCCATGATAAACGAACAGGAAACGTTTGGACTACAAGCTCCCACATAATCACAGCTGTTGTAGGATCTGGTGTGCTCTCCTTGGCCTGGGCAATAGCTCAGATGGGTTGGATTGCTGGTCCTGCGGTGATGCTCTTATTCAGTGTTGTCACTTTGTACACTTCATCATTTCTAGCTGATTGTTATCGTACTGGTGACCCCAAATTTGGGAAGAGAAATTATACTTTCATGGACGCAGTTCGCACCATACTGGGCGGGTACAGTGTTACGTTTTGTGGGATAGTTCAGTACCTGAATCTTTTCGGAAGCGCAGTAGGATACACAATTGCGGCTTCCATTAGCATGATGGCAATCAAAAGGTCTAATTGTATCCATTTCTCTGATGGAAAAAACCCATGTCACGTTTCCAGTAACCCATACATGATCAGTTTTGGCGCAATGCAAATTTTATTTTCTCAAATCCCAGATTTTCATAACATGTGGTGGCTCTCAATAGTTGCTGCGGTCATGTCTTTCACCTATTCCATAATTGGTCTCGCTCTTGCAATTGCCAAAATTGCAGAAACGGGTACTTTCAAGGGTAGCCTCACAGGAATAAGCATTGGAACTGTGACAGAGGCCCAAAAAGTATGGGGAGTTTTCCAAGCTCTTGGTAACATAGCCTTCGCCTATTCGTATTCTTTCATTCTCCTTGAAATTCAGGATACCATCAAATCCCCGCCATCTGAAGTAAAAACAATGAAGAAGGCTACAAAGATGAGTATTGCAGTGACCACAACATTTTATATGCTTTGTGGCTGCATGGGCTATGCTGCTTTTGGAGATTCAGCACCTGGGAATCTGCTCACTGGATTTGGTTTCGATAAACCATTTTGGCTTATAGATATTGCTAATGCTGCCATTGTAATTCACCTTGTGGGGGCATACCAAGTGTATGCCCAACCCCTCTTTGCTTTCATCGAGAAAGAGGCTGCAAAAAGATGGCCCAAAATTGACAGGGAATTCACAATTTCAATTCCTGGTTTTCCACCCTACAATCAGAACATATTTAACCTAGTTTGGAGGACAGTGTTTGTTATCATAACCACTGTTATATCAATGTTGCTGCCATTCTTCAATGACGTTTTGGGAGTGATTGGAGCATTGGGGTTTTGGCCTTTAACTGTCTACTTTCCTGTGGAGATGTATATCATACAAAAAAGGATCCCAAAATGGAGTACGAGATGGATTTGTCTGGAATTGTTGAGTGTTGTCTGCCTCATAGTAACAATCGTAGCTGGCCTTGGCTCAGTGGTCGGTGTCGTGCTTGATCTCCAGAAATATAAACCATTCAGCTCATACTATTAA 1464 0.4269 MMVENASRANLSYRRDYDIEEDSIDGVPLQTNSEYYDDDGHDKRTGNVWTTSSHIITAVVGSGVLSLAWAIAQMGWIAGPAVMLLFSVVTLYTSSFLADCYRTGDPKFGKRNYTFMDAVRTILGGYSVTFCGIVQYLNLFGSAVGYTIAASISMMAIKRSNCIHFSDGKNPCHVSSNPYMISFGAMQILFSQIPDFHNMWWLSIVAAVMSFTYSIIGLALAIAKIAETGTFKGSLTGISIGTVTEAQKVWGVFQALGNIAFAYSYSFILLEIQDTIKSPPSEVKTMKKATKMSIAVTTTFYMLCGCMGYAAFGDSAPGNLLTGFGFDKPFWLIDIANAAIVIHLVGAYQVYAQPLFAFIEKEAAKRWPKIDREFTISIPGFPPYNQNIFNLVWRTVFVIITTVISMLLPFFNDVLGVIGALGFWPLTVYFPVEMYIIQKRIPKWSTRWICLELLSVVCLIVTIVAGLGSVVGVVLDLQKYKPFSSYY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0411 487 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 6 480 - -
Apr1g0411 487 Pfam Transmembrane amino acid transporter protein 45 474 IPR013057 -
Apr1g0411 487 PANTHER OS05G0424000 PROTEIN-RELATED 6 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0411 Apr-Chr1 5109877 5117465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0411 23 487 Organic Solute Cotransporters AT5G09220 72.281 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0411 K24917 - gmx:100817699 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0411 1 5109877 5117465 Apr1g0411 1 5109877 5117465 ECH
Apr2g1053 2 16896989 16900662 Apr1g0411 1 5109877 5117465 ECH
Apr1g0411 1 5109877 5117465 Apr9g0023 9 334631 338345 PCT