Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3452 ATGGGTGTTGTTCCAACTGTGCTAGTTTTACCATGCCCTGCTCAAGGACATGTCAACCCACTGATGATCTTGTCTCAAAAATTGGTTGAAAAGGGTTGCAATATCATCTTTGTCACCCCTGAATTCATCCACAACAAAGTGGTTAGTTCCATGGGGAATCAAGCCGGCGGCGATAACGGACGATCGCCGATAAAGTTGGTGTCAATCCCGGATGGGTTAGGACCTGATGCAGACAGAAATAATATCATCTTACTATTTGATTCTATATTGAAGAACATGCCTGCTATGCTTGAGAGGCTAATTGAAGATCTTAGATTGAAAGATGGTGTGAGAGTAAGCTGCATAGTTGCTGATTTTCTTATGGCATGGGCGTTGGAAATTGCAAGAAAGATTGGAATCAGAGGAGTTCTGTTTTATCCATCAGCAGCAGCTATGTTAGCCTTGCAGTGCAGCATACCAAAGCTTATTGAGGATGGAATCATAGACTCTGATGGGTTGCCAACCACAAAAAAAAGGTTTCAGTTATCACCAAGCATTCCTCCCATGGACACAGAAATCATATGGTGGGCAAAAATATCTGACTCTATAACTGAGAAGATGGTATTCAACATTAGTCTTCAATCCATGAAAACTCTAGAATCCACAGAGTGGTGCCTTTGTAACTCCACACCCGATCTTGAACCTGGAGCATTATCATTCGTACCAAAGCTATTACCAATTGGTCCATTATTAAGAACCTATGACCATGATCAAGGTGTAACTGAAAGATCATTGGGACAATTCTGGGAAGAAGATTTTTCTTGTTTAAATTGGCTTGATCAACAACCTCATGGTTCTGTTATATATGTTGCATTCGGAAGTACCACTCTTTTTGATGAAAAACAATTCAAAGAACTCGCTCTCGGACTTGAACTTACCAATAGACCCTTTCTTTGGGTGGTGCGAAAAGATTCAGATTGTAGCAATAAAGTGTGTTTTCCTAACGAATTCAAGGGGAATCAAGGTAAGATAATTGAATGGGCTCCTCAAGAAAAGGTGCTATCCCACCCTGCCATTGCTTGCTTTATAAGTCACTGCGGTTGGAATTCGACTTTGGAGGGTTTGTCTAATGGAGTGCCTTTTTTGTGTTGGCCATATTATGCTGATCAATTCTTTGACAAAAAATATATTTGTGATGAGTGGAAGGTTGGATTGGGATTTGATTTGGATGAAAATGGGATGATCTCACGTGAAGAGATAAAAGTCAAAGTTGATAAATTGCTTAGTGATGAGAACATAAGAGTTAAGGCTCGTGAGATAAAGAAGAAGCTAATGAAGGACGTTGATCTTGGTGGAAGGTCTTCAGAGAACTTAAACAAGTTCATCAACTGGTTGAAGGAATAA 1383 0.4006 MGVVPTVLVLPCPAQGHVNPLMILSQKLVEKGCNIIFVTPEFIHNKVVSSMGNQAGGDNGRSPIKLVSIPDGLGPDADRNNIILLFDSILKNMPAMLERLIEDLRLKDGVRVSCIVADFLMAWALEIARKIGIRGVLFYPSAAAMLALQCSIPKLIEDGIIDSDGLPTTKKRFQLSPSIPPMDTEIIWWAKISDSITEKMVFNISLQSMKTLESTEWCLCNSTPDLEPGALSFVPKLLPIGPLLRTYDHDQGVTERSLGQFWEEDFSCLNWLDQQPHGSVIYVAFGSTTLFDEKQFKELALGLELTNRPFLWVVRKDSDCSNKVCFPNEFKGNQGKIIEWAPQEKVLSHPAIACFISHCGWNSTLEGLSNGVPFLCWPYYADQFFDKKYICDEWKVGLGFDLDENGMISREEIKVKVDKLLSDENIRVKAREIKKKLMKDVDLGGRSSENLNKFINWLKE* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3452 460 Gene3D Glycogen Phosphorylase B; 256 439 - -
Amo20g3452 460 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 266 424 IPR002213 GO:0008194
Amo20g3452 460 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 459 - -
Amo20g3452 460 Gene3D Glycogen Phosphorylase B; 9 451 - -
Amo20g3452 460 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Amo20g3452 460 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1 4 460 - -
Amo20g3452 460 CDD GT1_Gtf-like 7 455 IPR002213 GO:0008194
Amo20g3452 460 PANTHER EG:EG0003.4 PROTEIN-RELATED 4 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3452 Amo-Chr20 144004361 144006926 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g3452 5 459 Glycosyltransferase AT3G02100 46.405 1.45e-140 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3452 - - ahf:112716494 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3452 20 144004361 144006926 Amo20g3452 20 144004361 144006926 ECH
Amo20g3452 20 144004361 144006926 Amo10g2825 10 93268638 93271082 hybridization
Amo14g3780 14 143101236 143103908 Amo20g3452 20 144004361 144006926 PCT