Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2825 ATGAGTGTTCCAACTGTGCTAATTTTACCATTCCCTGCTCAAGGACATGTCAATCCAATGATGATCTTGTCTCGAAGATTGGCTGAAAATGGTTGTAATATCGTCTTTGTCAACGCTGAATTCATCCATAAGAAAGTGCTGAGTTCCCTGGGGAATCAAGAAGGCGGCGTTAACCGACAATCTCGGATAAAGTTGGTGTCAATCCCGGATGGATTAGGACCTGATGCAGACAGAAATAATTTGAGCCAAGTATCTGATTCTATAATGAAGAACATGCCTGCTATTCTTGAGAAGCTAATTGAAGATCTTAGATTGAAAGATGGTATCACAGTAAGTTGCATAGTTGCTGATTCAGCTATGGCAGGGGCGTTGAAAATTGCAAGCAAGATTGGAATCAAAGGAGTTGTGTTCTATCCATCATCAGCAGCAATGTTAGCCTTGCAGTGTAGCATACCAAAGCTTATTGATGATGGGATCATAGACTCTAATGGGTTGCCCAACACTCAAAAAACGTTTCAATTATCACCAAGTTTTCCACACATGGACACAGGATCCATATGGTGGGCAAAAGGGGTTGACTCCGTGTTTGGGAATGTGATATTCAACAATATTGTTCATGGCATGCAAACTCTGGAATTGACAGAGTGGTGGCTTTGTAACTCCACACCCGATCTTGAACCACAAGCATTATCTTATGTACCAAAGTTATTGCCAATTGGTCCATTATTGAGAAGATATGATGACAATCAAGGTGTAACTGAAAGATTTTTGGGACAATTCTGGGAAGAAGATCTGTCTTGTATAAATTGGCTTGATCAACAACCTCATGCTTCTGTCATATATCTTGCTTTCGGAAGTCTCACTCATTTTGATAAAAAACAATTCACAGAACTCGTTCTTGGACTTGAACTCACTAATAGACCATTTCTTTGGGTTGTGCGTCAAGATTCCAATTGCAACCCCCATGAATTTAAGGGGAATCAAGGTAAGATAGTTGAATGGGCTCCTCAACAAAAAGTGTTAAGTCACCCTGCCATAGCTTGTTTTGTTAGCCATTGCGGTTGGAATTCGACTATAGAAGGTTTGTCCAATGGAGTTCCCTTCTTGTGTTGGCCATGTTTTGGTGACCAATTCTTTAATAAAACATATATTTGTGATGAGTTGAAGGTTGGATTAGGATTTGATTTAGATGAAAATGGATTGATCTCGCGTGAAGAGATAAAAGTGAAAGTGGATAAAGTGCTTAGCGATGAGAACATAAGATCAAATGCTCATGTGTTAAAGGAAAAGATGTTGAACAATATAAAAGATGGAGGAAGGTCTTGTGAGAATTTAGACAAGTTCATCAAGTGGTTGAAAGAATAA 1365 0.3919 MSVPTVLILPFPAQGHVNPMMILSRRLAENGCNIVFVNAEFIHKKVLSSLGNQEGGVNRQSRIKLVSIPDGLGPDADRNNLSQVSDSIMKNMPAILEKLIEDLRLKDGITVSCIVADSAMAGALKIASKIGIKGVVFYPSSAAMLALQCSIPKLIDDGIIDSNGLPNTQKTFQLSPSFPHMDTGSIWWAKGVDSVFGNVIFNNIVHGMQTLELTEWWLCNSTPDLEPQALSYVPKLLPIGPLLRRYDDNQGVTERFLGQFWEEDLSCINWLDQQPHASVIYLAFGSLTHFDKKQFTELVLGLELTNRPFLWVVRQDSNCNPHEFKGNQGKIVEWAPQQKVLSHPAIACFVSHCGWNSTIEGLSNGVPFLCWPCFGDQFFNKTYICDELKVGLGFDLDENGLISREEIKVKVDKVLSDENIRSNAHVLKEKMLNNIKDGGRSCENLDKFIKWLKE* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2825 454 Gene3D Glycogen Phosphorylase B; 9 445 - -
Amo10g2825 454 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 452 - -
Amo10g2825 454 PANTHER EG:EG0003.4 PROTEIN-RELATED 3 454 - -
Amo10g2825 454 PANTHER UDP-GLYCOSYLTRANSFERASE 83A1 3 454 - -
Amo10g2825 454 CDD GT1_Gtf-like 6 434 IPR002213 GO:0008194
Amo10g2825 454 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 264 427 IPR002213 GO:0008194
Amo10g2825 454 Gene3D Glycogen Phosphorylase B; 255 433 - -
Amo10g2825 454 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2825 Amo-Chr10 93268638 93271082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2825 1 453 Glycosyltransferase AT3G02100 43.326 3.45e-130 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2825 - - ahf:112716494 700.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3452 20 144004361 144006926 Amo10g2825 10 93268638 93271082 hybridization
Amo14g3780 14 143101236 143103908 Amo10g2825 10 93268638 93271082 PCT