Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g3407 CTGCCACATAAGCTGCTCTTCGTTTTCTCCATTTCTCACTCTTTCTCTTACACTTCGTTCCTTACTTTGTCAAAGGAGAAAGTAAGAATGGTGAAGATTTGCTGCATTGGGGCTGGATATGTTGGGGGTCCTACAATGGCAGTGATTGCACTTAAGTGCCCGTCAATTGAGGTGGCTGTTGTCGATATCTCTAAATCCCGCATTGCAGCCTGGAACAGCGATCAGCTTCCAATATATGAGCCAGGCCTTGACAGTGTGGTAAAGCAATGTCGTGGCAAGAACCTCTTCTTCAGCACTGATGTAGAGAAACATGTATTTGAGGCTGACATAGTATTTGTCTCTGTCAACACCCCAACTAAGACTCGCGGTCTTGGAGCCGGCAAAGCAGCAGATTTGACATATTGGGAGAGTGCAGCTCGTATGATCGCCGACGTCTCTAAGTCAGACAAGATTGTGGTTGAGAAATCTACTGTCCCTGTCAAAACTGCTGAGGCCATAGAAAAAATTCTGACTCACAATGCCAAGGGTATCAACTTCCAGATTCTCTCAAACCCGGAATTCCTTGCCGAGGGAACTGCAATCCAAGATCTTTTCAACCCGGACCGAGTTCTCATTGGAGGCAGGGAGACCCCAGGAGGCCAGAAGGCCATTCAAACATTGAAGGAAGTTTATGCTCATTGGGTTCCTGAGGAGAGGATCCTAACCACAAACCTGTGGTCTGCAGAACTCTCTAAGCTTGCTGCCAATGCTTTCTTGGCCCAAAGGATTTCATCAGTTAACGCCATGTCGGCCCTCTGCGAGGCTACCGGTGCAAATGTTAAACAGGTGTCCTTTGCCGTTGGTACAGACACAAGGATTGGACCTAAGTTCCTCAATGCTAGTGTTGGATTTGGTGGATCCTGCTTCCAGAAAGATATCTTGAACCTTGTTTACATCTGCGAGTGCAATGGCCTTCCGGAGGTGGCAGAGTACTGGAAACAAGTCATCAAGATCAATGATTACCAGAAAAGCCGGTTTGTGAACCGTGTGGTTTCGTCTATGTTTAACACGGTTGCAAACAAGAAGATTGCCATTCTGGGATTTGCATTCAAGAAAGACACTGGAGACACTAGGGAGACACCGGCCATTGATGTGTGCAAGGGGCTACTTGGCGATAAGGCCCGACTGAGCATATACGATCCACAGGTGACCGAGGACCAAATCCAAAGGGATCTGTGGATGAACAAGTTTGATTGGGACCATCCTATCCACCTGCAGCCAACTAGCCCAACAACCGAGAAGAAGGTGAGTGTGGTTTGGGATGCGTATGAGGCAACAAAGGATGCAGATGGTGTTTGCATTCTAACCGAGTGGGATGAGTTCAAGAATCTTGATTATCAGAAGATATATGACAATATGAGGAAACCAGCATTTGTGTTTGATGGAAGGAACATTGTGGATATGGATAAGCTTCGTGAGATTGGATTCATTGTGTACTCAATTGGTAAGCCACTGGATCCATGGCTCAAAGACATGCCTGCTGTGGCCTAA 1530 0.4693 LPHKLLFVFSISHSFSYTSFLTLSKEKVRMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDSVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNAKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPGGQKAIQTLKEVYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVKQVSFAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVANKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKKVSVVWDAYEATKDADGVCILTEWDEFKNLDYQKIYDNMRKPAFVFDGRNIVDMDKLREIGFIVYSIGKPLDPWLKDMPAVA* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g3407 509 PIRSF UDPglc_DH_euk 25 509 IPR028356 GO:0003979
Amo20g3407 509 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 32 477 IPR017476 GO:0016616
Amo20g3407 509 Gene3D - 238 269 - -
Amo20g3407 509 SMART UDPG_MGDP_dh_C_a_2_a 357 481 IPR014027 GO:0016616|GO:0051287
Amo20g3407 509 PIRSF UDPglc_GDPman_dh 31 496 IPR017476 GO:0016616
Amo20g3407 509 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 30 509 - -
Amo20g3407 509 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 30 509 IPR028356 GO:0003979
Amo20g3407 509 Gene3D - 270 505 - -
Amo20g3407 509 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 239 338 IPR008927 -
Amo20g3407 509 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 239 333 IPR014026 GO:0016616|GO:0051287
Amo20g3407 509 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 344 492 IPR036220 -
Amo20g3407 509 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 357 480 IPR014027 GO:0016616|GO:0051287
Amo20g3407 509 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 32 213 IPR001732 GO:0016616|GO:0051287
Amo20g3407 509 Gene3D - 24 237 - -
Amo20g3407 509 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 243 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g3407 Amo-Chr20 143345236 143348120 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g3407 K00012 - gmx:100810907 942.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g2083 11 114417648 114423266 Amo20g3407 20 143345236 143348120 ECH
Amo20g3407 20 143345236 143348120 Amo20g3407 20 143345236 143348120 ECH
Amo20g3407 20 143345236 143348120 Amo10g2750 10 92188548 92191486 hybridization
Amo20g3407 20 143345236 143348120 Amo14g3762 14 142785718 142788664 PCT
Amo14g3762 14 142785718 142788664 Amo20g3407 20 143345236 143348120 PCT