Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2750 ATGTTCGAGGATAACTTTGTCCTAACACTTCTGTCACATAAGCTGCTCTTCGTTTTCTCCATTTCGCACTCTTTCTCTTACACTTCGTTCCTTACTTTGTCAAAAGAGAAAGTAAGAATGGTGAAGATTTGCTGCATTGGGGCTGGATATGTTGGGGGTCCTACAATGGCAGTGATTGCACTTAAGTGCCCGTCAATTGAGGTGGCTGTTGTCGATATCTCTAAATCCCGCATTGCAGCCTGGAACAGCGATCAGCTTCCAATATATGAGCCAGGCCTTGACAACGTGGTAAAGCAATGTCGTGGCAAGAACCTCTTCTTCAGCACTGATGTAGAGAAACATGTATTTGAGGCTGACATAGTATTTGTCTCTGTCAACACCCCAACTAAGACTCGCGGTCTTGGAGCCGGCAAAGCAGCAGATTTGACATATTGGGAGAGCGCAGCTCGCATGATCGCCGACGTCTCTAAGTCAGACAAGATTGTGGTTGAGAAATCCACTGTCCCTGTCAAAACTGCTGAGGCCATAGAAAAAATTCTGACTCACAATGCCAAGGGTATCAACTTCCAGATTCTCTCAAACCCGGAATTCCTTGCCGAGGGAACTGCAATCCAAGATCTTTTCAACCCGGACCGAGTTCTCATTGGAGGCAGGGAGACCCCAGGAGGCCAGAAGGCCATTCAAACATTGAAGGAAGTTTATGCTCATTGGGTTCCTGAGGAGAGGATCCTAACCACAAACCTGTGGTCTGCAGAACTCTCTAAGCTTGCTGCCAATGCTTTCTTGGCCCAAAGGATTTCATCAGTTAACGCCATGTCGGCCCTCTGCGAGGCTACCGGTGCAAATGTTAAACAGGTGTCCTTTGCGGTTGGTACAGACACAAGGATTGGACCTAAGTTCCTCAATGCTAGTGTTGGATTTGGTGGATCCTGCTTCCAGAAAGATATCTTGAACCTTGTTTACATCTGCGAGTGCAATGGCCTTCCGGAGGTGGCAGAGTACTGGAAACAAGTCATCAAGATCAATGATTACCAGAAAAGCCGGTTTGTGAACCGTGTGGTTTCGTCTATGTTTAACACGGTTGCAAACAAGAAGATTGCCATTCTGGGATTTGCATTCAAGAAAGACACTGGAGACACTAGGGAGACGCCGGCCATTGATGTGTGCAAGGGGCTACTTGGCGATAAGGCCCGACTGAGCATATATGATCCACAGGTGACCGAGGACCAAATCCAAAGGGATCTGTGGATGAACAAGTTTGATTGGGACCATCCTATCCACCTGCAGCCAACTAGCCCGACAACCGAGAAGAAGGTGAGTGTGGTTTGGGATGCGTATGAGGCAACAAAGGATGCAGATGGTGTTTGCATTCTAACCGAGTGGGATGAGTTCAAGAATCTTGATTATCAGAAGATATATGACAATATGAGGAAACCAGCATTTGTGTTTGATGGAAGGAACATTGTGGATATGGATAAGCTTCGTGAGATTGGATTCATTGTGTACTCAATTGGTAAGCCACTGGATCCATGGCTCAAAGACATGCCTGCTGTGGCCTAA 1560 0.4692 MFEDNFVLTLLSHKLLFVFSISHSFSYTSFLTLSKEKVRMVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDNVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNAKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPGGQKAIQTLKEVYAHWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVKQVSFAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVSSMFNTVANKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKKVSVVWDAYEATKDADGVCILTEWDEFKNLDYQKIYDNMRKPAFVFDGRNIVDMDKLREIGFIVYSIGKPLDPWLKDMPAVA* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2750 519 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 249 348 IPR008927 -
Amo10g2750 519 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 42 223 IPR001732 GO:0016616|GO:0051287
Amo10g2750 519 Gene3D - 248 279 - -
Amo10g2750 519 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 40 519 IPR028356 GO:0003979
Amo10g2750 519 SMART UDPG_MGDP_dh_C_a_2_a 367 491 IPR014027 GO:0016616|GO:0051287
Amo10g2750 519 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 354 502 IPR036220 -
Amo10g2750 519 Gene3D - 34 247 - -
Amo10g2750 519 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 42 487 IPR017476 GO:0016616
Amo10g2750 519 PIRSF UDPglc_GDPman_dh 41 506 IPR017476 GO:0016616
Amo10g2750 519 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 367 490 IPR014027 GO:0016616|GO:0051287
Amo10g2750 519 Gene3D - 280 515 - -
Amo10g2750 519 PIRSF UDPglc_DH_euk 35 519 IPR028356 GO:0003979
Amo10g2750 519 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 249 343 IPR014026 GO:0016616|GO:0051287
Amo10g2750 519 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 40 519 - -
Amo10g2750 519 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 253 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2750 Amo-Chr10 92188548 92191486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2750 K00012 - gmx:100810907 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3407 20 143345236 143348120 Amo10g2750 10 92188548 92191486 hybridization
Amo10g2750 10 92188548 92191486 Amo14g3762 14 142785718 142788664 PCT
Amo14g3762 14 142785718 142788664 Amo10g2750 10 92188548 92191486 PCT