Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2737 ATGTGGAACTTTGCTTCAAACTGTATTGCTGGAAGTGTGCGGCAGAAAAATGATTCCACAAAGCCAACTCATTCTGCATCGGAATGTTCTGATGATGAGAATTCGGTTGTTGGGAGAGAAGAAGGGCTGGAATGCCCAATATGCTGGGAATCTTTCAACATTGTTGAAAATGTGCCCTATGTATTGTGGTGTGGGCACACCCTTTGTAAAAATTGTATCCTGGGACTGCAATGGGCCGTTGTGAAGTTCCCAACGCTGCCAATTCAACTTCCTCTCTTTATCTCCTGCCCGTGGTGCAACCTTCTATCTTTCCGTCTGGTTTATCAAGGGAATATTAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGCATGAATGGTGATAGAGGGAAATCGCACTCAAATTGTGGTGGTGATAATCAACAACATTGGCCAATTAAAGACAATTTAACCATGGGAAGCTATGTAAGCCATGGAAATGCCCGGAGGAGCCAAGTTCACCACCCAGAGACATCTGGTTCTGGCCCTTATCATGGCAATACCGGCGACTATCTCAGTATGGAAAGGCTGCATGCTTCTCTTCGGAAGTCGCTGGTTTTTGTTGTCCAATTGACAGCTAAGTTCCCATTGGTCATTATATTTCTTTTGATCATCTTATATGCGATACCAGCTAGTGCTGCCATCTTGGCTCTGTATATACTAGTTACGATTCTCTTTGCTCTCCCGTCATTTCTCATCTTATACTTCTCATATCCTAGTTTGGATTGGCTTATCAGAGAAATTGTCACTTGA 801 0.4332 MWNFASNCIAGSVRQKNDSTKPTHSASECSDDENSVVGREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYQGNIKFPRKNYFLLWMVESMNGDRGKSHSNCGGDNQQHWPIKDNLTMGSYVSHGNARRSQVHHPETSGSGPYHGNTGDYLSMERLHASLRKSLVFVVQLTAKFPLVIIFLLIILYAIPASAAILALYILVTILFALPSFLILYFSYPSLDWLIREIVT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2737 266 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Amo10g2737 266 SUPERFAMILY RING/U-box 40 103 - -
Amo10g2737 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 137 IPR013083 -
Amo10g2737 266 PANTHER OS03G0211100 PROTEIN 1 266 - -
Amo10g2737 266 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
Amo10g2737 266 Pfam RING-type zinc-finger 45 78 IPR027370 -
Amo10g2737 266 PANTHER UBIQUITIN-PROTEIN LIGASE 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2737 Amo-Chr10 92026048 92029116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2737 1 266 Miscellaneous Gene Families AT3G29270 63.469 3.20e-118 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2737 - - gmx:100809368 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3394 20 143137361 143140954 Amo10g2737 10 92026048 92029116 hybridization
Amo10g2737 10 92026048 92029116 Amo14g3749 14 142651494 142654257 PCT
Amo14g3749 14 142651494 142654257 Amo10g2737 10 92026048 92029116 PCT