Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g3749 ATGTGGAACTTTGCTTCGAATTGCATTGTTGGGAGTGTGGGTCAGAGAAACGAGTGTGCAAGGCCATCTCACGCTACTTCAGAATGTTCCGACGATGAGACTTCTATTGTGAGCAGAGAAGAAGGACTGGAATGTCCAATATGCTGGGAATCTTTTAACATTGTCGAAAATGTGCCTTATGTTTTGTGGTGCGGTCACACCCTATGTAAAAATTGCATCCTGGGACTGCAATGGGCTGTGGTTAAATTTCCAACACTTCCAATTCAGCTTCCACTTTTTATCTCCTGCCCATGGTGCAACCTTCTATCTTTCCGTTTAGTTTATCGGGGAAATCTGAGATTCCCTCACAAGAACTACTTTCTTCTTTGGATGGTTGAGAGTATGAATGGTGATAGAGTGAAGACCCATTCAACTTCATATGGGGATCATCATCATCATCATCATCATCCAGTGTTTCCAAATAGGGACAATTTTGCTACAGGAAGCCAATTAAACCATGGCAACACTAGGAGGGGACAAGTTCTCCATCCAGAGTCATTGAGTTCCAATCGGTTTCATCACAATACTGGTAACTACCTCAGTATGGAAAGACTGCATACATCTATTCGCAAGTCCCTGGTTTTATTTGTTCACTTGACAGCAAAGTTCCCCTTGATCATCGTATTTCTTTTGATTGTCTTATATGCAATACCGGCCAGTGCAGCCATTTTGGCTCTGTATATACTTATTACCATTGTGTTTGCTCTCCCATCATTTCTCATCTTGTACTTTGCATATCCTAGTTTGGATTGGCTTATCAGGGAAATTATCACTTGA 816 0.4167 MWNFASNCIVGSVGQRNECARPSHATSECSDDETSIVSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCNLLSFRLVYRGNLRFPHKNYFLLWMVESMNGDRVKTHSTSYGDHHHHHHHPVFPNRDNFATGSQLNHGNTRRGQVLHPESLSSNRFHHNTGNYLSMERLHTSIRKSLVLFVHLTAKFPLIIVFLLIVLYAIPASAAILALYILITIVFALPSFLILYFAYPSLDWLIREIIT* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g3749 271 PANTHER LIGASE, PUTATIVE-RELATED 1 271 - -
Amo14g3749 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 137 IPR013083 -
Amo14g3749 271 SUPERFAMILY RING/U-box 36 101 - -
Amo14g3749 271 ProSiteProfiles Zinc finger RING-type profile. 45 100 IPR001841 -
Amo14g3749 271 PANTHER UBIQUITIN-PROTEIN LIGASE 1 271 - -
Amo14g3749 271 Pfam RING-type zinc-finger 45 78 IPR027370 -
Amo14g3749 271 ProSitePatterns Zinc finger RING-type signature. 64 73 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g3749 Amo-Chr14 142651494 142654257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo14g3749 1 271 Miscellaneous Gene Families AT3G29270 61.397 1.70e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g3749 - - adu:107486675 517.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g3394 20 143137361 143140954 Amo14g3749 14 142651494 142654257 PCT
Amo10g2737 10 92026048 92029116 Amo14g3749 14 142651494 142654257 PCT
Amo14g3749 14 142651494 142654257 Amo20g3394 20 143137361 143140954 PCT
Amo14g3749 14 142651494 142654257 Amo10g2737 10 92026048 92029116 PCT