Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g2563 ATGGTGAAGCTTTTAGGATTGAGTCGTGTCTGGGCCGATGAGCCCAGAGAAATCACGTCGAGGTCCAATTTGACCAGTGAGACCAGTGAGAATGGGTGGCTTATCAGGTTCTTTGATTCCTCCTTCTTCTGCGAGTGGATCGCAGTTAGCTACTTGTACAAGCATGACCATGCAGGGGTGCGCGATTACCTCTGCAATAGAATGTACACACTTCCATTGCAGGGAATTGAGAGCTATCTGTTCCAAGTGTGTTACATGATGATACATAAGCCTAGCCCCTCTTTGGATAAGTTTGTCATTGATATTTGCTCCAAGTCTCTTAAGATTGCTTTGAAGGTGCATTGGTTCTTATTGGCTGAGCTTGAGGACAATGATGATGATAATGATAATGAAGCTATTAGTAGGATGCAGGAGAAGTGCCGGATTGCGGCCACCTTGATGGGTGAGTGGGTGCCCCTGATTAGGTCTCAAGGTTCATCTTCCAGCGTTGGAGGCAAGAACCAAGTTTTCAATAGGTTCTTGTCTTCAACACGCCGGTTGTCGATAACACCTACGCCTCCTCCTCAGAAGTCCATGTCTTTCTCGCCTTCTTCAGGAAAGAATTTGCAGGTGAACGTTAGTCCGCAGTCTCCTGATGAAAACAACTTGTTTAAGAAATTGTTGCCAAGTCCAAAGTTTAGAGATGCTTTGCTGTTTAGGAAGTCAGCGGAAAAAGATGACAATGATTCTGAGAAGGATGGCTTTTTCAAGAGGCTTTTAAGGGATAGCAAAGGTGAGGATGAGTTGGGCCAGAAAATCCGAGATGCATTTCACTTCAGAAAGTCAACCGAGAAATATGATGAAGACTCTGACAAGGATAATTTCTTTAAAAGGATCTTAAGGGACAATAGAGGTGATGATGAAGACTCTGAAAAGGATGGATTCTTTAAAAGGCTCTTGAGGGACAATAAAGGCGAGGTGGAGGGTTCTCCCTCAAGTTCGGATGGAATTTTTAAGAGATTGTTTCGTGATAGCAAGAATGATTCTGAGGATAAAACACCGACCAAAATGATGGCAGAAGAGGAGAAAGAAGGATTTTTCCGTAAGTTTTTCAGGGAAAAATTTGAAGATAAGAAGGATTTGAATGATGAAGGAGAAAATGCTAATTCCGAAGAGAGAGGTGCAAAGCATTCTGAACAGGATGAAAAAGAAGGGTTTTTCCGAAAATTTGTTAAGGATATATTTGAAGACAAGAAAGATGCAAATGATAAAATTGAAGAAGGTACTGCCACTATTGAGGAGGAAGAGCCTTCTGAATTCCCTTTGTTCAAAAGATTATTTCGTGTGCACCCTGAAGATGGTAAAAGTAGTTCAACCAATGAAAACAACGGTGAAAGTAGTCCAGGTACAGAAAATTTCTTCCGCAAATTGTTTAGAGATCGTGAACGTTCAGTTGAAGATTCAGAACTATGGGGGTCGAATAAGCAGAAAGAGAAGCATCCTGAATCACCTGAGAAATTTGCAACAAAACCTCCACTTCCATTCAATCAATCACATTTCCGTAAAGTAGCTTACCATGAGTCATTGGAATTTGTGCTGTCATTATGCGAGACATCGTTTGGGTTAGTTGATGTATTTCCAGTTGAAGACCGCAAACATGCTTTGCATGAGTCTCTAGCAGAGATCAATTTACATTTGACAGAGGCACAGAATACTGGAGGAGTTTGTTTTCCTTTGGGAAAGGGCATGTACCGTGTGCTTTATATTCCTGAAGATGAAGCTGTTCTCTTGAATTCTAGGGAGAAGGCGCCTTACATGATCTGTGTTGAAGTATTGAGATGTGACATGACAAGCAATTCCAAGGACACGTCCAGTCCTCATAAACTTTCCAAAGGTGGAATTCCCTTGGCAAATGGAGATGCTCTCTTGCCAAAACCACCACCATGGGCTTATCCACTGTGGACAACACAAGAGGTTTATCGTAATAGCAATGATAGGATGTCAAGATCAACTGCTCGGGCAATTGACCAGGCAATGACTCATGTATCCGAGGCAAAAGTCAACTTTGTTAGTGTGAGTCTTTCTGTAGAATCACAATTACATGTTCAGCCAGAGAAAACTGAAGTGGATCTGCATGTTAGCAGTCGAGGTCCTTATAGTAACAGTGTTGGTGAAATGGCAAGGGGAGGACGTAACAGTGATGTGAAGTGCGTACGGGTAGTGCTGACCACTGATCCTGGGCTTAGAATGGAAGATATTGGGGAACAAGCACCTAGACGGCGGAGGGAACATCGTCGTGTGCCAAGTACAGTGGCAATAGAGGAAGTAAAAGCGGCGGCTGCTAAAGGGGAAGCACCTCTTGGACTTCCTTTGAAAGGTGCTGGTCAGGATTCATCAGATGCACAACCAAGGGCTAATGGAATTGCCCGCAAAGCGAGTGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAAGAGAGGATACGCAAGGCTTCCATTCACGGCAATTCACCTGGTTGGGACTTGAGATCTGTTATTGTAAAGAGCGGTGATGATTGCAGGCAGGAGCATCTGGCGGTTCAACTAATTTCACATTTCTATGATATCTTCCAAGAAGCAGGCCTACCTCTCTGGCTACGCCCTTATGAAGTTTTGTGTACATCATCTTACACAGCTCTTATCGAAACTATTCCAGACACGGCTTCTCTACATTCGATCAAGAGTAGATATCCCAACATCTCAAGTTTACGTGGGTTCTTTATTGCCAAGTATCAAGAAAATTCTCCAAGTTTCAAACTTGCCCAGAGGAACTTCGTTGAAAGTATGGCTGGATATTCCCTAGTCTGCTACCTTCTGCAGGTGAAGGATAGGCACAATGGGAACCTCTTATTGGATGAAGAAGGTCATATTATACATATTGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAGCTTCTTGAGGTCATGGATTCTGATGCTGAGGGCATTCCAAGTGAATTCTTTGATTATTTCAAGGTTTTATGCATTCAAGGCTTTCTTACTTGCCGTAAGCATGCTGAGCGAATAATTCTTCTTGTTGAGATGTTACAGGACTCTGGTTTCCCCTGCTTTAAAAATGGTCCACGGACAATACAGAACCTACGGAAGCGATTCCACCTCAGTTTAACGGAAGAGCAATGTGTATCATTGGTGCTTACTCTGATCAGCAGTAGCCTGGATGCATGGCGGACACGGCAGTACGACTATTACCAGAGGGTTTTGAATGGAATATTGTGA 3297 0.431 MVKLLGLSRVWADEPREITSRSNLTSETSENGWLIRFFDSSFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLQGIESYLFQVCYMMIHKPSPSLDKFVIDICSKSLKIALKVHWFLLAELEDNDDDNDNEAISRMQEKCRIAATLMGEWVPLIRSQGSSSSVGGKNQVFNRFLSSTRRLSITPTPPPQKSMSFSPSSGKNLQVNVSPQSPDENNLFKKLLPSPKFRDALLFRKSAEKDDNDSEKDGFFKRLLRDSKGEDELGQKIRDAFHFRKSTEKYDEDSDKDNFFKRILRDNRGDDEDSEKDGFFKRLLRDNKGEVEGSPSSSDGIFKRLFRDSKNDSEDKTPTKMMAEEEKEGFFRKFFREKFEDKKDLNDEGENANSEERGAKHSEQDEKEGFFRKFVKDIFEDKKDANDKIEEGTATIEEEEPSEFPLFKRLFRVHPEDGKSSSTNENNGESSPGTENFFRKLFRDRERSVEDSELWGSNKQKEKHPESPEKFATKPPLPFNQSHFRKVAYHESLEFVLSLCETSFGLVDVFPVEDRKHALHESLAEINLHLTEAQNTGGVCFPLGKGMYRVLYIPEDEAVLLNSREKAPYMICVEVLRCDMTSNSKDTSSPHKLSKGGIPLANGDALLPKPPPWAYPLWTTQEVYRNSNDRMSRSTARAIDQAMTHVSEAKVNFVSVSLSVESQLHVQPEKTEVDLHVSSRGPYSNSVGEMARGGRNSDVKCVRVVLTTDPGLRMEDIGEQAPRRRREHRRVPSTVAIEEVKAAAAKGEAPLGLPLKGAGQDSSDAQPRANGIARKASDALSGELWEAKKERIRKASIHGNSPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLCTSSYTALIETIPDTASLHSIKSRYPNISSLRGFFIAKYQENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLLDEEGHIIHIDFGFMLSNSPGGVNFESAPFKLTRELLEVMDSDAEGIPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKNGPRTIQNLRKRFHLSLTEEQCVSLVLTLISSSLDAWRTRQYDYYQRVLNGIL* 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g2563 1098 MobiDBLite consensus disorder prediction 332 352 - -
Amo20g2563 1098 PANTHER PHOSPHATIDYLINOSITOL KINASE 264 333 IPR015433 GO:0046854|GO:0048015
Amo20g2563 1098 PANTHER PHOSPHATIDYLINOSITOL KINASE 12 260 IPR015433 GO:0046854|GO:0048015
Amo20g2563 1098 PANTHER PHOSPHATIDYLINOSITOL KINASE 291 1098 IPR015433 GO:0046854|GO:0048015
Amo20g2563 1098 CDD PI4Kc_III_beta 806 1098 - -
Amo20g2563 1098 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 840 854 IPR018936 GO:0016301
Amo20g2563 1098 SUPERFAMILY ARM repeat 54 125 IPR016024 -
Amo20g2563 1098 PANTHER BNAA02G34040D PROTEIN 264 333 - -
Amo20g2563 1098 PANTHER BNAA02G34040D PROTEIN 12 260 - -
Amo20g2563 1098 PANTHER BNAA02G34040D PROTEIN 291 1098 - -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 318 352 - -
Amo20g2563 1098 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 934 954 IPR018936 GO:0016301
Amo20g2563 1098 ProSiteProfiles PIK helical domain profile. 1 140 IPR001263 -
Amo20g2563 1098 Pfam Phosphatidylinositol 3- and 4-kinase 837 1044 IPR000403 -
Amo20g2563 1098 Gene3D - 895 1096 IPR036940 GO:0016301
Amo20g2563 1098 SMART pi3k_hr1_6 837 1096 IPR000403 -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 449 463 - -
Amo20g2563 1098 Gene3D - 761 890 - -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 445 464 - -
Amo20g2563 1098 Gene3D - 41 148 IPR042236 -
Amo20g2563 1098 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 815 1083 IPR000403 -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 371 397 - -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 480 499 - -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 179 216 - -
Amo20g2563 1098 SUPERFAMILY Protein kinase-like (PK-like) 566 1091 IPR011009 -
Amo20g2563 1098 MobiDBLite consensus disorder prediction 480 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g2563 Amo-Chr20 120182180 120191698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g2563 1 1097 Lipid Metabolism Gene Families AT5G09350 68.046 0.0 1460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g2563 K19801 - gmx:100781715 1763.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g2563 20 120182180 120191698 Amo20g2563 20 120182180 120191698 ECH
Amo10g2064 10 74406362 74415814 Amo20g2563 20 120182180 120191698 hybridization
Amo13g3753 13 126687227 126693420 Amo20g2563 20 120182180 120191698 PCT
Amo20g2563 20 120182180 120191698 Amo13g3753 13 126687227 126693420 PCT