Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1512 ATGGCCACCCACACATACACCTACAAGCAATTCAGCTGCTTCAACAAGACCTTCACCAACACCGAGCCCGGACCTCCCTCTGACGTCCTCCACGCCTTCCACTCCTTCTCCTCCGCCGGCGCCACTTCCATGTCCGCCGACAACCTCCTCGCCTTTCTCACCGATCACCAGCGCGAACCCCAATGCACCTCCGACGACTCCCTTCGCATCATTCAATCGCTCAAAGGAGATCACAAAACCGACGACGGACTCACCCTCGACGACTTCTTCCACTTCCTCCTACGCGACGATCTCAATGCTCCCTTCAAATCGGAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATTTACCGGGCACAATTCCTATCTGATTGGGAACCAACTAACCAGTGATTGCAGTGATGTGCCAATCATAGATGCTTTGGTACGAGGTGTGCGAGTGATTGAACTTGATTTATGGCCGAATTCAACTAAAGATGATGTTGAGGTTTTTCATGGAAGAACTCTTACCACTCCCGTCTCACTAAGGCAATGTTTGTGGTCCATAAGAGAGCATGCTTTTGTTACATCTAAGTATCCTGTCATTATAACTTTTGAAGACCACCTTACTCCTGATCTTCAGGCTGTAGTTGCAGAGATGGTGACTGAAATATTTGGGGAACTGCTTTATTATCCTGAGACAGATTTGCTGTCTGAATTCCCCTCCCCAGAATCGTTGAAAGGTCGAATTCTCATATCAACTAAACCACCAATAGAATATCTTGATTCCAAATCTTGTGACGACGAAGACAAAAAAACGAAATCAGCTGACAAAGGATCACAATCACCAGATGTTACTAATAAAGTGGAAAGTGATGACAAAGATGTGGAAGATTTGAATGAAAGTGATGAAAAATCATACAAGGAGAGTGCACCTAAGTATAAACGTCTGATTACAATCCATGCTGGCAAATCAAAGGGTGATTTTCAGGAAGACTTGAAGGTTGCTGGTAAAGTTAAGCGTTTGAGCTTAAGTGAAAGTAAACTTGAAAAGGCTTCTGAATCTTTTGCACCTGACATTGTAAGGTTCACCCAGAAGAATATTCTCAGAGTGTATCCAAAGGGAACACGCATAACCTCCTCTAATTACAAGCCACACATAGCATGGACGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGGCATGGCAAATCACTTTGGTTCATGCAAGGGATGTTCAAAGCAAATGGAGGGTGTGGCTATGTGAAAAAACCTGATTTTCTTGTCGAAAAAGGTCCGAATAACGAGGTTTTCGATCCTAAAAGAACATTGCCGGTGAACAAGACATTAAAGGTAAAAGTCTACTTGGGGACAGGTTGGAGCTCAGATTTCAGCCTAACGGACTTCGATTCCCATTCACCACCAGACTTCTATGTGAAGATTGATATTGCTGGAGTACCTGCTGATAGAGCGAAGAAGAAAACAAAGACAATTAAAAATAACTGGTTTCCCGTGTGGGAAGAAGAGTTTGAATTCCCATTAAGTGTCCCAGATCTGGCTTTGCTACGTATACAAGTTAAAGAAGAAAATAGAACTGAGAAGGATGATTTTGCTGGCCAGACATGTTTGCCAGTCACAGAGCTCAAGTCTGGATTTCGTTCAGTCCCTCTCTATGATGAAAAGGGCGAGAAATATAAATCTGTCAAGCTTTTAATGCGGTTTCAATTCAAATGA 1728 0.434 MATHTYTYKQFSCFNKTFTNTEPGPPSDVLHAFHSFSSAGATSMSADNLLAFLTDHQREPQCTSDDSLRIIQSLKGDHKTDDGLTLDDFFHFLLRDDLNAPFKSEVHHDMNAPLSHYFIFTGHNSYLIGNQLTSDCSDVPIIDALVRGVRVIELDLWPNSTKDDVEVFHGRTLTTPVSLRQCLWSIREHAFVTSKYPVIITFEDHLTPDLQAVVAEMVTEIFGELLYYPETDLLSEFPSPESLKGRILISTKPPIEYLDSKSCDDEDKKTKSADKGSQSPDVTNKVESDDKDVEDLNESDEKSYKESAPKYKRLITIHAGKSKGDFQEDLKVAGKVKRLSLSESKLEKASESFAPDIVRFTQKNILRVYPKGTRITSSNYKPHIAWTHGAQMVAFNMQGHGKSLWFMQGMFKANGGCGYVKKPDFLVEKGPNNEVFDPKRTLPVNKTLKVKVYLGTGWSSDFSLTDFDSHSPPDFYVKIDIAGVPADRAKKKTKTIKNNWFPVWEEEFEFPLSVPDLALLRIQVKEENRTEKDDFAGQTCLPVTELKSGFRSVPLYDEKGEKYKSVKLLMRFQFK* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1512 575 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 337 425 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo20g1512 575 Gene3D - 25 104 - -
Amo20g1512 575 Pfam C2 domain 448 549 IPR000008 -
Amo20g1512 575 Gene3D Phosphatidylinositol (PI) phosphodiesterase 105 440 IPR017946 GO:0006629|GO:0008081
Amo20g1512 575 MobiDBLite consensus disorder prediction 259 305 - -
Amo20g1512 575 Pfam Phosphoinositide-specific phospholipase C, efhand-like 28 98 IPR015359 -
Amo20g1512 575 SMART plcx_3 108 252 IPR000909 -
Amo20g1512 575 MobiDBLite consensus disorder prediction 284 305 - -
Amo20g1512 575 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 6 574 - -
Amo20g1512 575 CDD PI-PLCc_plant 107 414 - -
Amo20g1512 575 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 108 252 - -
Amo20g1512 575 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 340 426 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo20g1512 575 Pfam Phosphatidylinositol-specific phospholipase C, X domain 110 252 IPR000909 -
Amo20g1512 575 SUPERFAMILY PLC-like phosphodiesterases 108 428 IPR017946 GO:0006629|GO:0008081
Amo20g1512 575 MobiDBLite consensus disorder prediction 259 275 - -
Amo20g1512 575 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 6 574 IPR001192 GO:0035556
Amo20g1512 575 PRINTS Phospholipase C signature 113 131 IPR001192 GO:0035556
Amo20g1512 575 PRINTS Phospholipase C signature 139 159 IPR001192 GO:0035556
Amo20g1512 575 PRINTS Phospholipase C signature 236 253 IPR001192 GO:0035556
Amo20g1512 575 PRINTS Phospholipase C signature 365 386 IPR001192 GO:0035556
Amo20g1512 575 PRINTS Phospholipase C signature 386 404 IPR001192 GO:0035556
Amo20g1512 575 PRINTS Phospholipase C signature 541 551 IPR001192 GO:0035556
Amo20g1512 575 ProSiteProfiles C2 domain profile. 428 557 IPR000008 -
Amo20g1512 575 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 447 574 IPR035892 -
Amo20g1512 575 CDD C2_PLC_like 446 575 - -
Amo20g1512 575 SMART C2_3c 447 555 IPR000008 -
Amo20g1512 575 SMART plcy_3 311 427 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo20g1512 575 SUPERFAMILY EF-hand 7 110 IPR011992 -
Amo20g1512 575 Gene3D C2 domain 442 575 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1512 Amo-Chr20 36869873 36877496 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1512 5 575 Acyl Lipid Metabolism Gene Families AT2G40116 58.569 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1512 K05857 - gmx:100799027 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1512 20 36869873 36877496 Amo20g1512 20 36869873 36877496 ECH
Amo20g1512 20 36869873 36877496 Amo10g1050 10 20577475 20583525 hybridization
Amo20g1512 20 36869873 36877496 Amo17g0286 17 4670757 4695692 PCT
Amo20g1512 20 36869873 36877496 Amo07g0506 07 5738675 5745569 PCT
Amo17g0286 17 4670757 4695692 Amo20g1512 20 36869873 36877496 PCT
Amo07g0506 07 5738675 5745569 Amo20g1512 20 36869873 36877496 PCT