Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0286 ATGGCGCAAAATATCAAAACGATCAAGTACTTCCACCGGAAGTTCGTCCAAGAAGAGCAGACGGCGCCGGAGGACGTTAAGGAAGCTTTCGCCACGTTCGCGGAGGGCGGCGACACCATGTCCGCCGGCCAGCTTCGCGAATTCGTGGACAAGGTTCAGTGCCAACCGCAATACACCGTCGAGGAGTGTGAGCGGATCATGGAGACCTTCTTGAGATCGCGAAGGGACGAAAGTGATAATGATGAGAACAACAAGAAGAAGAAAAAGGGCGGCGACGGCGACGGTAATGACAATGGTGGTTGTTGTTTCACCCTCGAAGAATTCTTCCAGTTCTTGTATTTTGATGAATTCAATGCTCCTCTCTCTCCTGAGGTACATCATGACATGGATGCTCCATTATCACATTATTTCATAAACACAGGGCACAATTCATATCTCACTGGGAATCAACTAAGCAGCGATTGCAGTGAGGTGCCAATCATACAAGCCTTGAATAAAGGTGTTCGAGTTATTGAACTTGACTTATGGCCCAATTCAAATAAAACTGATATTGATGTAGTTCATGGAAGGACACTTACTGCTCCTGTGTCACTATACAAATGTTTAGTGGCCATAAAAGATAATGCTTTTGTTGCTTCTGAATACCCAGTCATTATAACTTTAGAAGACCACCTTACAAAAGATCTTCAAGCTCTAGCTGCAGAGGTAACAAATGAAATATTTGGAGATTTGTTATACTACCCTCCAGAAGATGCAATGGATGAATTCCCATCACCAGAATCATTAAAAGGGAGAATCCTAATATCAACAAAACCACCTCCAGTTGATGAACTAAGAGATACCTTTTCCAAGCGTTTGATAAAGGATGGTAAGGAATCTGAAAGAGAATCTGCTGATGAAGCTCTATCACCCCCTCCAAGCATTGGTTCTGATGTGGACGCTTGTGATAGGTACAATGCAAGTAGTGATCGTGAATGTGAAGAAGAATTGACGCCTTCAAGTGAGATACATAGTGGAGTAATTCATTACAAAAGAATGATTACAATCCATGCTGGAAAACCCAAGGGTCATATAAAAGATTCCTTATCAGTTGATGGCAAAGTTAAGCGTTTAAGTTTGAGCGAACAGGAAATTGAAAGGGCTTCATCTTCTTATGGAGATGATCTTATTAGTTTTACACAGAGGAATATTCTGAGGGTGTATCCTAAGGGGACACGTGTCAACTCCTCAAATTTCCGGCCACATATAGGGTGGTTGTATGGAGCACAAATGGTTGCAATGAACATGCAGGGGTATGGAAAATCTCTATGGCACGCACAAGGTTTGTTTAGAGCAAATGGAGGGAGTGGTTATGTGAAAAAACCTCCACTCCTAATGAACAAAAATGATGATGGCCAATCTAATATTTTTAATCCCAAAACACCATATCCCACCTCCAGAATTATGAAGGTGAAAATATATATGGGAACAGGGTGGATTTCTAATTTCAGCAAAACACACTTTGATACGTTCTCTCCACCAGACTTTTACATAAAGGTGTCTATACATGGTGTACAATATGACAAAGCTAGGCACAGAACAAGGGTGATTTCAGATAATTGGTTTCCAGTTTGGGAAGAAGAATTTGAAATCCCATTGAAAGTTCCAAGTCTTGCATTGGTTCTGATAGAGGCAAGAGAGTATGATAAGCATGAAAAGGATGATTTTGGAGGCCAAACATGTTTCCCTGTCGATGAAATAAGACCGGGCTTCCGTTCAGTCCCTTTATATGATGAAAAGGGCAATAAATATAGCCATGTAAAGCCAAGTTCTCTTCCTTCTTCTCCCCCGAACCCCACTCCTCCTTCTACCTCGCTCTCGTCGCTCTCCACGCGAACAACCCCCACTCCCTACTCCTCAAGAAGGAACATGTCTTTGCCGACACCGTTTACTCCACCACCGCCATTTTCGGCGGCAAGACCCACCGTATTGAAATCGACTGCGGCTCCTCCAGGGATAACGACTCTGCCTCCTCCAAGCTCTCTTTCTCCGTCGACGGCGACAGGAATTCCGAATATGTCATCCAAACAGACGTACAGCGTGTGCTTCTGCTGCCGGCGGCGCTTCAAGCTTGCGGCGGCGGAGGCACCGCCGGAGATCAAGTCTCTGTTCGGAAAATACTCAGACGACAACGAGCTCATGACAGCTTCGCACCTTCAGAAGTTCATGGTTGAGGTTCAGTGCCAACAAAACGCCACTGAAGAAGAAGCTCAAGCCATCATCGATAGCCTCAAGCATTTCCATCGAAAGGGTCTCAATCTCGATGCTTTCTTCAAATATCTCTTCAGTGACTCCAACCTTCCCTTGCTTCCTTCTCTTGGAGTTCACCATGACATGAATTTACCCTTGTCCCATTATTTCATATATACCGGACATAATTCCTATCTAACTGGGAATCAACTTAGCAGTGACTGCAGTGATATCCCCATCATAAAGGCACTGGAGAGAGGTGTAAGGGTCATTGAATTAGACATTTGGCCTAATGCATCGAAGGATAATATCGATGTTCTTCACGGAAGGACATTGACTACTCCGGTTGAGCTTATCAGATGTTTGAATTCTATCAAAGAACATGCCTTTGTTGCATCAGAGTATCCAGTTGTAATAACATTGGAAGACCACCTTACTCCGGATCTTCAGGCTAAAGTAGCCGAGATGGTAGCTCAAACATTTGGGGAAATACTATTTTCTCCTGGATCAGAAGCCTTGAAGGAATTCCCTTCTCCTGAATCACTTAAAAGGAGGATCATTATATCAACCAAACCGCCTAAAGAGTACCTTGAGGCAAAGGACAAAGTCGATGATCCACCGCAGGAAAAAGCTTCAGGGGACAATCCAAAGCAGCGAAAGGTTTCAGGCGATGATGAAGCTTGGGGGAAGGAAGTCCCAAGCTTGAAAGGTGGAACTATTGCTGATTACAAGGACAATGAGGATGAAGAAAATTTCGATGGCGAGGAAGATCTCGAAGAAGGTGATAAGTCATCACACCACAACGAAGCTTCAGAATATAGACGTTTAATTGCCATTCATGCTGGGAAGCCGAAAGGTGGCATAACTGAGTGCCTCAAAGTGGATCCTGAAAAAGTGACACGTCTAAGTTTAAGTGAGCAACAACTTGAAAAGGCTGCTATGACTTATGGAAAAGAAATTGTCAGGTTTACGCAGCGGAATATATTAAGGGTGTATCCAAAAGGTACTCGCATCGATTCATCAAATTATAACCCATTAATTGGATGGATGCATGGGGCTCAAATGGTTGCATTTAACATGCAGGGATACGGTAGATCTCTTTGGTTGATGTACGGAATGTTCAAAGCCAATGGAGGGTGTGGTTATGTTAAAAAACCAGATTTTCTGTTAAAGAATGGTCCAAATGGTGAGATCTTCGATCCTAAAGCGAAGTTACCTGTGAAGACTACTTTGAAGGTGACTGTTTATATGGGAGAAGGATGGTATTATGATTTCAAGCATACACACTTTGATCAATACTCACCTCCAGATTTTTACACAAGAGTGGGGATTGCTGGAGTCCCTGATGATACCGTCATGAGAAGAACTAAGGCGATAGAGGATAACTGGGTGCCTTCTTGGAACGAAACTTTCGAGTTCCCATTAACTGTTCCGGAACTTTCACTGCTTCGAATTGAGGTTCACGAGTACGATATGTCTGAGAAGGATGACTTTGGTGGCCAATCATGCCTACCTGTTTGGGAGCTAAGAAGCGGCATTCGAGCCGTTCCACTGTATAGCCGCAAGGGAGACAAATACAACACTGTGAAGCTTCTTATGCGCTTTGAATTTTATTGA 3846 0.4358 MAQNIKTIKYFHRKFVQEEQTAPEDVKEAFATFAEGGDTMSAGQLREFVDKVQCQPQYTVEECERIMETFLRSRRDESDNDENNKKKKKGGDGDGNDNGGCCFTLEEFFQFLYFDEFNAPLSPEVHHDMDAPLSHYFINTGHNSYLTGNQLSSDCSEVPIIQALNKGVRVIELDLWPNSNKTDIDVVHGRTLTAPVSLYKCLVAIKDNAFVASEYPVIITLEDHLTKDLQALAAEVTNEIFGDLLYYPPEDAMDEFPSPESLKGRILISTKPPPVDELRDTFSKRLIKDGKESERESADEALSPPPSIGSDVDACDRYNASSDRECEEELTPSSEIHSGVIHYKRMITIHAGKPKGHIKDSLSVDGKVKRLSLSEQEIERASSSYGDDLISFTQRNILRVYPKGTRVNSSNFRPHIGWLYGAQMVAMNMQGYGKSLWHAQGLFRANGGSGYVKKPPLLMNKNDDGQSNIFNPKTPYPTSRIMKVKIYMGTGWISNFSKTHFDTFSPPDFYIKVSIHGVQYDKARHRTRVISDNWFPVWEEEFEIPLKVPSLALVLIEAREYDKHEKDDFGGQTCFPVDEIRPGFRSVPLYDEKGNKYSHVKPSSLPSSPPNPTPPSTSLSSLSTRTTPTPYSSRRNMSLPTPFTPPPPFSAARPTVLKSTAAPPGITTLPPPSSLSPSTATGIPNMSSKQTYSVCFCCRRRFKLAAAEAPPEIKSLFGKYSDDNELMTASHLQKFMVEVQCQQNATEEEAQAIIDSLKHFHRKGLNLDAFFKYLFSDSNLPLLPSLGVHHDMNLPLSHYFIYTGHNSYLTGNQLSSDCSDIPIIKALERGVRVIELDIWPNASKDNIDVLHGRTLTTPVELIRCLNSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMVAQTFGEILFSPGSEALKEFPSPESLKRRIIISTKPPKEYLEAKDKVDDPPQEKASGDNPKQRKVSGDDEAWGKEVPSLKGGTIADYKDNEDEENFDGEEDLEEGDKSSHHNEASEYRRLIAIHAGKPKGGITECLKVDPEKVTRLSLSEQQLEKAAMTYGKEIVRFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMYGMFKANGGCGYVKKPDFLLKNGPNGEIFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPDDTVMRRTKAIEDNWVPSWNETFEFPLTVPELSLLRIEVHEYDMSEKDDFGGQSCLPVWELRSGIRAVPLYSRKGDKYNTVKLLMRFEFY* 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0286 1281 MobiDBLite consensus disorder prediction 940 1012 - -
Amo17g0286 1281 PRINTS Phospholipase C signature 795 813 IPR001192 GO:0035556
Amo17g0286 1281 PRINTS Phospholipase C signature 1247 1257 IPR001192 GO:0035556
Amo17g0286 1281 PRINTS Phospholipase C signature 918 935 IPR001192 GO:0035556
Amo17g0286 1281 PRINTS Phospholipase C signature 1092 1110 IPR001192 GO:0035556
Amo17g0286 1281 PRINTS Phospholipase C signature 1071 1092 IPR001192 GO:0035556
Amo17g0286 1281 PRINTS Phospholipase C signature 821 841 IPR001192 GO:0035556
Amo17g0286 1281 SUPERFAMILY EF-hand 9 128 IPR011992 -
Amo17g0286 1281 CDD C2_PLC_like 480 599 - -
Amo17g0286 1281 ProSiteProfiles C2 domain profile. 463 591 IPR000008 -
Amo17g0286 1281 Gene3D - 708 782 - -
Amo17g0286 1281 Gene3D - 19 121 - -
Amo17g0286 1281 MobiDBLite consensus disorder prediction 597 682 - -
Amo17g0286 1281 MobiDBLite consensus disorder prediction 940 974 - -
Amo17g0286 1281 Gene3D Phosphatidylinositol (PI) phosphodiesterase 787 1145 IPR017946 GO:0006629|GO:0008081
Amo17g0286 1281 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 790 934 - -
Amo17g0286 1281 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 127 271 - -
Amo17g0286 1281 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 370 456 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0286 1281 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 1045 1131 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0286 1281 Gene3D C2 domain 1148 1281 IPR035892 -
Amo17g0286 1281 Gene3D C2 domain 477 605 IPR035892 -
Amo17g0286 1281 Pfam Phosphatidylinositol-specific phospholipase C, X domain 792 934 IPR000909 -
Amo17g0286 1281 Pfam Phosphatidylinositol-specific phospholipase C, X domain 129 271 IPR000909 -
Amo17g0286 1281 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 372 458 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0286 1281 MobiDBLite consensus disorder prediction 74 93 - -
Amo17g0286 1281 SMART C2_3c 481 589 IPR000008 -
Amo17g0286 1281 SMART C2_3c 1153 1261 IPR000008 -
Amo17g0286 1281 MobiDBLite consensus disorder prediction 288 313 - -
Amo17g0286 1281 ProSiteProfiles C2 domain profile. 1133 1263 IPR000008 -
Amo17g0286 1281 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1153 1280 IPR035892 -
Amo17g0286 1281 SUPERFAMILY EF-hand 703 791 IPR011992 -
Amo17g0286 1281 MobiDBLite consensus disorder prediction 617 639 - -
Amo17g0286 1281 CDD C2_PLC_like 1151 1281 - -
Amo17g0286 1281 SUPERFAMILY PLC-like phosphodiesterases 790 1134 IPR017946 GO:0006629|GO:0008081
Amo17g0286 1281 Pfam Phosphoinositide-specific phospholipase C, efhand-like 712 777 IPR015359 -
Amo17g0286 1281 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 686 1280 IPR001192 GO:0035556
Amo17g0286 1281 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 601 IPR001192 GO:0035556
Amo17g0286 1281 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 1046 1132 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0286 1281 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 686 1280 - -
Amo17g0286 1281 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 11 601 - -
Amo17g0286 1281 Gene3D Phosphatidylinositol (PI) phosphodiesterase 124 469 IPR017946 GO:0006629|GO:0008081
Amo17g0286 1281 SMART plcx_3 790 934 IPR000909 -
Amo17g0286 1281 SMART plcx_3 127 271 IPR000909 -
Amo17g0286 1281 SUPERFAMILY PLC-like phosphodiesterases 127 460 IPR017946 GO:0006629|GO:0008081
Amo17g0286 1281 SMART plcy_3 343 459 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0286 1281 SMART plcy_3 1016 1133 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0286 1281 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 481 599 IPR035892 -
Amo17g0286 1281 Pfam C2 domain 1154 1255 IPR000008 -
Amo17g0286 1281 Pfam C2 domain 483 582 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0286 Amo-Chr17 4670757 4695692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0286 3 601 Acyl Lipid Metabolism Gene Families AT3G55940 47.619 1.60e-177 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0286 K05857 - gmx:547864 1023.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0286 17 4670757 4695692 Amo07g0506 07 5738675 5745569 hybridization
Amo20g1512 20 36869873 36877496 Amo17g0286 17 4670757 4695692 PCT
Amo10g1050 10 20577475 20583525 Amo17g0286 17 4670757 4695692 PCT
Amo17g0286 17 4670757 4695692 Amo20g1512 20 36869873 36877496 PCT
Amo17g0286 17 4670757 4695692 Amo10g1050 10 20577475 20583525 PCT