Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1509 ATGTCCAAACAGACTTACAGAGTTTGCTTCTGCTGCCGCCGGCGATTCAAGCTCGCCGTGTCGGAGGCGCCGCCGGAGATAAGGAATCTCTTCGACCGGTACTCCGAGAACGGGCTCATGACGGCGTCGCATCTGCGGAGCTTCATGGTTGAAGTGCAGAGAGAGGAGACAGCGACGGAGGAGGAAGCGCAGGGAATCATCGATGGACTCAAGCATCTCAGTATCTTCCATAGAAGAGGTCTCAATCTCGAAAGTTTCTTTAAGTTCCTCTTCAGTGATAACAATCCACCACTTGCACAACCAAAGGTGCACCATGATATGAATGCACCATTGTCTCATTATTATATATTTACCGGTCACAATTCCTATCTGACGGGAAATCAGCTTAGTAGTGACTGCAGTGATGTCCCCATCATACGTGCACTGCAGAGAGGTGTTAGGGTCATTGAATTGGATATATGGCCCAATGCATCAAAGGATGATGTGGATGTTCTTCATGGAAGGACATTGACTACTCCCGTGGCACTCATCAAATGTTTGAGGTCTATTAAGGAGCATGCTTTTGTTGCATCAGAATATCCAGTTGTAATAACCTTAGAAGACCATCTTACTCCTGATCTTCAAGCCAAAGTGGCTGAGATGATTACTCAAACTTTTGGAGACATACTATTTTGTCCTACCCCAGAAAGTGTGAAGGAATTCCCTTCTCCCGAATCACTTAAAAGAAGGGTCATTATATCAACCAAACCACCTAAGGAGTATCTTGAGGCAAAAGACATAAAGGAAAAGGAGGATGAATCACATCAGGGAAAGGCTTTGGGTGACGAAGAAGCATGGGGGAAGGAAGTCCCAAGTCTTAAAGGCGGTACTATTGCTGATTACAAGGAAGATGCTGATGAAGAAAAGTCTCGTCAAGATGTATGTGCTGAATATCGACGTTTGATCGCTATTCATGCTGGAAAGCCCAAAGGAGGATTACTTGAAGGTCTTAGAGTGGATCCTGATAAAGTGAGGCGATTAAGTCTAAGCGAGCAGCAGCTTGAAAATGCTGCTTTATCTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATACTGAGGGTGTATCCAAAAGGCACTCGCATTACCTCGTCGAATTATAACCCATTAATTGGGTGGATGCACGGAGCGCAAATGGTTGCATTTAACATGCAGGGCTATGGCAGGTCTCTGTGGTTGATGCAGGGAATGTTCAAAGCTAATGGAGGATGTGGTTATGTTAAAAAACCAGATTTTCTATTAAAGACTGGTCCAAATAATGAGGTCTTTGATCCAAAGGCTAAGTTGCCTGTGAAGACTACTTTGAGGGTAACTGTATATATGGGAGAAGGATGGTACTACGATTTCAAGCATACACACTTCGATCAATACTCACCTCCAGATTTCTATGCAAGAGTGGGGATTGCTGGAGTCCCTGATGACACTGTGATGAGGAAAACCAAGACAAAAGAGGACAATTGGTTGCCAACTTGGAACGAGGTATTCGAGTTCCCACTATCTGTTCCAGAACTGGCTTTGCTTCGTGTAGAAGTTCACGAGTATGATATGTCTGAGAAGGATGACTTTGGTGGACAGACATGCTTGCCTGTGTGTGAACTTCAGACCGGAATTCGAGCAGTTCCACTGAATAACCGCAAGGGAGAGAAGTACAACAATGTGAAGCTTCTCATGCGCTTTGAGTTCATCTGA 1731 0.4466 MSKQTYRVCFCCRRRFKLAVSEAPPEIRNLFDRYSENGLMTASHLRSFMVEVQREETATEEEAQGIIDGLKHLSIFHRRGLNLESFFKFLFSDNNPPLAQPKVHHDMNAPLSHYYIFTGHNSYLTGNQLSSDCSDVPIIRALQRGVRVIELDIWPNASKDDVDVLHGRTLTTPVALIKCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMITQTFGDILFCPTPESVKEFPSPESLKRRVIISTKPPKEYLEAKDIKEKEDESHQGKALGDEEAWGKEVPSLKGGTIADYKEDADEEKSRQDVCAEYRRLIAIHAGKPKGGLLEGLRVDPDKVRRLSLSEQQLENAALSHGKEIVRFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLLKTGPNNEVFDPKAKLPVKTTLRVTVYMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPDDTVMRKTKTKEDNWLPTWNEVFEFPLSVPELALLRVEVHEYDMSEKDDFGGQTCLPVCELQTGIRAVPLNNRKGEKYNNVKLLMRFEFI* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1509 576 Gene3D C2 domain 443 576 IPR035892 -
Amo20g1509 576 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Amo20g1509 576 CDD PI-PLCc_plant 104 415 - -
Amo20g1509 576 SUPERFAMILY PLC-like phosphodiesterases 105 429 IPR017946 GO:0006629|GO:0008081
Amo20g1509 576 Gene3D Phosphatidylinositol (PI) phosphodiesterase 102 441 IPR017946 GO:0006629|GO:0008081
Amo20g1509 576 SMART C2_3c 448 556 IPR000008 -
Amo20g1509 576 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 576 IPR001192 GO:0035556
Amo20g1509 576 Pfam C2 domain 449 550 IPR000008 -
Amo20g1509 576 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Amo20g1509 576 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Amo20g1509 576 PRINTS Phospholipase C signature 542 552 IPR001192 GO:0035556
Amo20g1509 576 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Amo20g1509 576 PRINTS Phospholipase C signature 366 387 IPR001192 GO:0035556
Amo20g1509 576 PRINTS Phospholipase C signature 387 405 IPR001192 GO:0035556
Amo20g1509 576 SMART plcy_3 311 428 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo20g1509 576 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 340 426 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo20g1509 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 448 575 IPR035892 -
Amo20g1509 576 ProSiteProfiles C2 domain profile. 429 558 IPR000008 -
Amo20g1509 576 SUPERFAMILY EF-hand 24 101 IPR011992 -
Amo20g1509 576 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Amo20g1509 576 Gene3D - 22 101 - -
Amo20g1509 576 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 576 - -
Amo20g1509 576 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 341 427 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo20g1509 576 CDD C2_PLC_like 446 575 - -
Amo20g1509 576 SMART plcx_3 105 249 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1509 Amo-Chr20 36806756 36811356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1509 1 576 Acyl Lipid Metabolism Gene Families AT3G55940 66.442 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1509 K05857 - gmx:100784534 965.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1509 20 36806756 36811356 Amo10g1047 10 20518500 20523099 hybridization
Amo20g1509 20 36806756 36811356 Amo07g0507 07 5750800 5755002 PCT
Amo07g0507 07 5750800 5755002 Amo20g1509 20 36806756 36811356 PCT