Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1047 ATGTCCAAACAGACTTACAGAGTTTGCTTCTGCTGCCGCCGGCGATTCAAGCTCGCCGTGTCGGAGGCGCCGCCGGAGATAAGGAATCTCTTCGACCGGTACTCCGAGAACGGGCTCATGACGGCGTCGCATCTGCGGAGCTTCATGGTTGAAGTGCAGAGAGAGGAGACAGCGACGGAGGAGGAAGCGCAGGGAATCATTGATGGACTCAAGCATCTCAGTATCTTCCATAGAAGAGGTCTCAATCTCGAAAGTTTCTTTAAGTTCCTCTTCAGTGATAACAATCCACCACTTGCACAACCAATGGTGCACCATGATATGAATGCACCATTGTCTCATTATTATATATTTACCGGTCACAATTCCTATCTGACGGGAAATCAGCTTAGTAGTGACTGCAGTGATGTCCCCATCATACGTGCACTGCAGAGAGGTGTTAGGGTCATTGAATTGGATATATGGCCCAATGCATCAAAGGATGATGTGGATGTTCTTCATGGAAGGACATTGACTACTCCCGTGGCACTCATCAAATGTTTGAGGTCTATTAAGGAGCATGCTTTTGTTGCATCAGAATATCCAGTTGTAATAACCTTAGAAGACCATCTTACTCCTGATCTTCAAGCCAAAGTGGCTGAGATGATTACTCAAACTTTTGGAGACATACTATTTTGTCCTACCCCAGAAAGTGTGAAGGAATTCCCTTCTCCAGAATCACTTAAAAGAAGGGTCATTATATCAACCAAACCACCTAAGGAGTACCTTGAGGCAAAAGACATAAAGGAAAAGGAGGATGAATCACATCAGGGAAAGGCTTTGGGTGACGAAGAAGCATGGGGGAAGGAAGTCCCAAGTCTTAAAGGCGGTACTATTGCTGATTACAAGGTTATAGACTGTAACAATGGGAATGATGATGATGATGATGATGATGATGATGATGACAATGACGATGATGATGAGGAAGATGCTGATGAAGAAAAGTCTCGTCAAGATGTATGTGCTGAATATCGACGTTTGATCGCTATTCATGCTGGAAAGCCCAAAGGAGGATTACTTGAAGGTCTTAGAGTGGATCCTGATAAAGTGAGGCGATTAAGTCTAAGCGAGCAGCAGCTTGAAAATGCTGCTTTATCTCATGGAAAAGAAATTGTCAGGTTTACTCAGCGGAATATACTGAGGGTGTATCCAAAAGGCACTCGCATTACCTCGTCGAATTATAACCCATTAATTGGGTGGATGCACGGAGCGCAAATGGTTGCATTTAACATGCAGGGCTATGGCAGGTCTCTGTGGTTGATGCAGGGAATGTTCAAAGCTAATGGAGGATGTGGTTATGTTAAAAAACCAGATTTTCTATTAAAGACTGGTCCAAATAATGAGGTCTTTGATCCAAAGGCTAAGTTGCCTGTGAAGACTACTTTGAGGGTAACTGTATATATGGGGGAAGGATGGTACTACGATTTCAAGCATACACACTTCGATCAATACTCACCTCCAGATTTCTATGCAAGAGTGGGGATTGCTGGAGTCCCTGATGACACTSTGATGAGGAAAACCAAGACAAAAGAGGACAATTGGTTGCCAACTTGGAACGAGGTATTCGAGTTCCCACTATCTGTTCCAGAACTGGCTTTGCTTCGTGTAGAAGTTCACGAGTATGATATGTCTGAGAAGGATGACTTTGGTGGACAGACATGCTTGCCTGTGTGTGAACTTCAGACCGGAATTCGAGCAGTTCCACTGCATAACCGCAAGGGAGAGAAGTACAACAATGTGAAGCTTCTCATGCGCTTTGAGTTCATCTGA 1806 0.443 MSKQTYRVCFCCRRRFKLAVSEAPPEIRNLFDRYSENGLMTASHLRSFMVEVQREETATEEEAQGIIDGLKHLSIFHRRGLNLESFFKFLFSDNNPPLAQPMVHHDMNAPLSHYYIFTGHNSYLTGNQLSSDCSDVPIIRALQRGVRVIELDIWPNASKDDVDVLHGRTLTTPVALIKCLRSIKEHAFVASEYPVVITLEDHLTPDLQAKVAEMITQTFGDILFCPTPESVKEFPSPESLKRRVIISTKPPKEYLEAKDIKEKEDESHQGKALGDEEAWGKEVPSLKGGTIADYKVIDCNNGNDDDDDDDDDDDNDDDDEEDADEEKSRQDVCAEYRRLIAIHAGKPKGGLLEGLRVDPDKVRRLSLSEQQLENAALSHGKEIVRFTQRNILRVYPKGTRITSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMQGMFKANGGCGYVKKPDFLLKTGPNNEVFDPKAKLPVKTTLRVTVYMGEGWYYDFKHTHFDQYSPPDFYARVGIAGVPDDTXMRKTKTKEDNWLPTWNEVFEFPLSVPELALLRVEVHEYDMSEKDDFGGQTCLPVCELQTGIRAVPLHNRKGEKYNNVKLLMRFEFI* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1047 601 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 365 451 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo10g1047 601 SMART plcy_3 336 453 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo10g1047 601 Gene3D - 22 100 - -
Amo10g1047 601 SUPERFAMILY PLC-like phosphodiesterases 105 454 IPR017946 GO:0006629|GO:0008081
Amo10g1047 601 Gene3D Phosphatidylinositol (PI) phosphodiesterase 101 466 IPR017946 GO:0006629|GO:0008081
Amo10g1047 601 ProSiteProfiles C2 domain profile. 454 583 IPR000008 -
Amo10g1047 601 Pfam Phosphatidylinositol-specific phospholipase C, X domain 107 249 IPR000909 -
Amo10g1047 601 PRINTS Phospholipase C signature 233 250 IPR001192 GO:0035556
Amo10g1047 601 PRINTS Phospholipase C signature 412 430 IPR001192 GO:0035556
Amo10g1047 601 PRINTS Phospholipase C signature 110 128 IPR001192 GO:0035556
Amo10g1047 601 PRINTS Phospholipase C signature 567 577 IPR001192 GO:0035556
Amo10g1047 601 PRINTS Phospholipase C signature 391 412 IPR001192 GO:0035556
Amo10g1047 601 PRINTS Phospholipase C signature 136 156 IPR001192 GO:0035556
Amo10g1047 601 MobiDBLite consensus disorder prediction 255 281 - -
Amo10g1047 601 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 366 452 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo10g1047 601 CDD C2_PLC_like 471 600 - -
Amo10g1047 601 MobiDBLite consensus disorder prediction 297 330 - -
Amo10g1047 601 SUPERFAMILY EF-hand 24 99 IPR011992 -
Amo10g1047 601 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 473 600 IPR035892 -
Amo10g1047 601 MobiDBLite consensus disorder prediction 302 326 - -
Amo10g1047 601 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 2 601 IPR001192 GO:0035556
Amo10g1047 601 SMART C2_3c 473 581 IPR000008 -
Amo10g1047 601 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 105 249 - -
Amo10g1047 601 Pfam C2 domain 474 575 IPR000008 -
Amo10g1047 601 CDD PI-PLCc_plant 104 440 - -
Amo10g1047 601 Gene3D C2 domain 468 601 IPR035892 -
Amo10g1047 601 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 2 601 - -
Amo10g1047 601 SMART plcx_3 105 249 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1047 Amo-Chr10 20518500 20523099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1047 1 601 Acyl Lipid Metabolism Gene Families AT3G55940 67.276 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1047 K05857 - gmx:100784534 966.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1509 20 36806756 36811356 Amo10g1047 10 20518500 20523099 hybridization
Amo10g1047 10 20518500 20523099 Amo07g0507 07 5750800 5755002 PCT
Amo07g0507 07 5750800 5755002 Amo10g1047 10 20518500 20523099 PCT