Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1356 ATGATGAAACCAAAACCATCATCATTCTCTTCTTCTACTTCTTCTTCTTCTCTTCTTATCAGAACCAAGCCTCGTTTCTCTCCCTACCTCTTCATTACCCTTTTAACCTTCATTCTCTTCGCTTCCATCCTCTATGGCCATGATTCCTTCTTCATCTTCCAACAACTACTACACAATAAACACAACACACTCTTATCCACACCCACCGAGTTCACCGAGTTGACTCATCCCCCGCTACCAGAACAACAAGATTTCTCGTATTCCTCCGAGAGGCGCACGGAGGAGAAGGTGGCGGCGGTTGCGGTGGGTGAAACGGAGGAAGGGTGTGATGTTTTCAGTGGAAGATGGGTTCGGGACGAGTTGACTCGGCCGCTCTACCAGGAACCGGACTGTCCGTACATACAGCCTCAGCTGACGTGTCAAGAACACGGCCGTCCCGAGATGGAGTACCAGCGGTGGCGCTGGCAGCCTCACGGTTGCGATCTTCCCACATTCAATGCAAGTTTGATGCTGGAAACGCTTCGTGGGAAGAGGATGCTGTTTGTTGGAGACTCCCTTAATAGAGGCCAATATGTCTCTTTGGTATGCCTTCTCCATAGTCTCATTCCAGAAGGTGCAAAATCCATGGAAACCTTTGATTCACTCACTGTATTCACAGCCAAGGAATACAATGCTACAATTGAGTTCTATTGGGCACCTTTTCTTCTTGAATCAAACTCCGATAACGCATTCATCCATAGGGTATCTGACAGGATCGTCAGAAAGGGTTCAATCAACAAGCATGGCCGTTTCTGGAAAGGTGCTGACATTGTTGTATTCAACACCTATCTTTGGTGGATAACTGGTTCCAAGATGAAAATCTTGCTTGGATCCTTTAATGATGAAGCAAAAGAGATTGTTGAGCTGTCAACAGAGGAGGCTTATAGAATGGCTATGAAAAGCATGGTTAAATGGGTGAAGCAGAACATGGACCCAAACAGGACAAGAGTGTTTTTCACCAGCATGTCACCTTCTCATGCAAAGAGCATAGAATGGGGAGGTGAAGCAGGAGGTAACTGCTACAATGAAACTACACCAATTGATGATCCCACATATTGGGGCTCTGACTCTTACAAAAGCATAATGCAAGTAATTGGAGAAGTCTTCAGAAAATCCAATGTTCCCATAACATTTCTCAACATCACACAGTTGTCCAATTACCGCAAAGATGCACACACTTCAATCTACAAGAAACAATGGAACCCTTTAACACCTCAGCAACTAGCTAACCCTTCTAGCTATGCTGATTGCACACATTGGTGTTTGCCTGGACTACAAGATACTTGGAATGAGCTTCTTTATGCAAAGTTGTTTTATCCTTGA 1362 0.4501 MMKPKPSSFSSSTSSSSLLIRTKPRFSPYLFITLLTFILFASILYGHDSFFIFQQLLHNKHNTLLSTPTEFTELTHPPLPEQQDFSYSSERRTEEKVAAVAVGETEEGCDVFSGRWVRDELTRPLYQEPDCPYIQPQLTCQEHGRPEMEYQRWRWQPHGCDLPTFNASLMLETLRGKRMLFVGDSLNRGQYVSLVCLLHSLIPEGAKSMETFDSLTVFTAKEYNATIEFYWAPFLLESNSDNAFIHRVSDRIVRKGSINKHGRFWKGADIVVFNTYLWWITGSKMKILLGSFNDEAKEIVELSTEEAYRMAMKSMVKWVKQNMDPNRTRVFFTSMSPSHAKSIEWGGEAGGNCYNETTPIDDPTYWGSDSYKSIMQVIGEVFRKSNVPITFLNITQLSNYRKDAHTSIYKKQWNPLTPQQLANPSSYADCTHWCLPGLQDTWNELLYAKLFYP* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1356 453 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 162 448 IPR026057 GO:0016740
Amo20g1356 453 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 15 453 IPR029962 GO:0016413
Amo20g1356 453 Pfam PMR5 N terminal Domain 108 161 IPR025846 -
Amo20g1356 453 PANTHER PMR5 DOMAIN, PC-ESTERASE, PROTEIN TRICHOME BIREFRINGENCE-LIKE 32/46-RELATED 15 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1356 Amo-Chr20 29236129 29240918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1356 - - aip:107623814 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1356 20 29236129 29240918 Amo20g1356 20 29236129 29240918 ECH
Amo20g1356 20 29236129 29240918 Amo10g1008 10 18849300 18857316 hybridization
Amo20g1356 20 29236129 29240918 Amo17g0227 17 3263436 3267596 PCT
Amo17g0227 17 3263436 3267596 Amo20g1356 20 29236129 29240918 PCT