Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1008 ATGCAGCAACTTCGGCGCAAGAACTCGCTTTCGAGCTCTGAAACAATGAAAGCAAGAAAAAGCGGAAGCAATAATAATCTCTCCGTGTTGATGATAGTGTTCTCCATATTCGTTTTCGGCGTCTTCTTCATGTTCAGCGAGGACCTTAAGTCACTCGCTGAATTCTCCTTCTTCAAGCCTCAACAACTCCAACAAGGTTCCAATGACAATAATAATGTCACAGAAACTGTTAATAGAGCTCAGCTTCAGGTTGAGAAGAAGAACGAGAAGGAGAAGATTGAATTGCCTTTTCTCACGCAACAAGTTACCTGCATCAAGAACGGAAGACCTGATTCCATGTACCAGAGTTGGAGATGGCAACCCAGAGATTGCTCTTTGCCCAAGTTTAAGGCGAGAGTTTTGCTTGAGAAGCTTAGAGGGAAGAGGCTGATGTTTGTTGGAGACTCATTGAATAGGAACCAGTGGGAATCAATGATTTGTTTGGTCCAGTCTGCTGTTCCTCATGGCAAAAAGACCTTGAACAAGACTGGCTCCATTTCTGTCTTCAAACTCCAGGATTATAATGCAACGGTGGAGTTCTACTGGGCACCGTTCATTGTAGAGTCAAACTCAGATGATCCAAAGATGCATAGCATATTGAACCGAATCATCATGCCTGAATCAATTGAGAAGCATGGTGCCAATTGGAAGAATGTGGACTACCTTGTTTTTAACACTTACATATGGTGGATGAACACACCAACTATGAAAGTCTTACGAGGGTCGTTTGATGAAGGGTCAACGGAGTATGATGAAGTTGCAAGGCCAATTGCATATAGAAGAGTCTTAAAGACATGGTCAAAATGGGTGGAGGACAACATTGATCCAAATCGAACCAAAGTTTTCTTCAACAGCATGTCCCCTCTTCACATAAGGAGTGGTGATTGGAACAACCCAGATGGCACAAAATGTGCTAAAGAAACAACACCAATTCTRAACACATCAAYCCCACAAGTTGGAACKGATCGAAGGCTTTTTGTGATTGCCAACAATYTAACACAATCTATGAAGGTGCCAGTGAACTTCATTAACATAACAACATTATCTGAGTTCAGAAAAGATGCACATACATCAATTTACACCATACGCCAAGGAAAGTTGTTAACTGCAGAGCAACAAGCTAACCCTGCCACTTTTGCTGATTGTATTCATTGGTGCCTGCCCGGCCTGCCCGACACGTGGAACGAGTTCCTTTACACGCGTATTATCTCGATATCTTGA 1260 0.4254 MQQLRRKNSLSSSETMKARKSGSNNNLSVLMIVFSIFVFGVFFMFSEDLKSLAEFSFFKPQQLQQGSNDNNNVTETVNRAQLQVEKKNEKEKIELPFLTQQVTCIKNGRPDSMYQSWRWQPRDCSLPKFKARVLLEKLRGKRLMFVGDSLNRNQWESMICLVQSAVPHGKKTLNKTGSISVFKLQDYNATVEFYWAPFIVESNSDDPKMHSILNRIIMPESIEKHGANWKNVDYLVFNTYIWWMNTPTMKVLRGSFDEGSTEYDEVARPIAYRRVLKTWSKWVEDNIDPNRTKVFFNSMSPLHIRSGDWNNPDGTKCAKETTPILNTSXPQVGTDRRLFVIANNLTQSMKVPVNFINITTLSEFRKDAHTSIYTIRQGKLLTAEQQANPATFADCIHWCLPGLPDTWNEFLYTRIISIS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1008 419 Coils Coil 70 90 - -
Amo10g1008 419 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 93 417 IPR029962 GO:0016413
Amo10g1008 419 Pfam PMR5 N terminal Domain 96 124 IPR025846 -
Amo10g1008 419 PANTHER PROTEIN ESKIMO 1-LIKE 93 417 - -
Amo10g1008 419 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 126 413 IPR026057 GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1008 Amo-Chr10 18849300 18857316 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1008 - - gmx:100785597 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1356 20 29236129 29240918 Amo10g1008 10 18849300 18857316 hybridization
Amo10g1008 10 18849300 18857316 Amo17g0227 17 3263436 3267596 PCT
Amo17g0227 17 3263436 3267596 Amo10g1008 10 18849300 18857316 PCT