Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0227 ATGAAGCCACCATTTTCACCACCTTCTTCTTCTTCCTCTCTTCTCAGTCTGAGAGGCAAGGGTCGCCTCTCTCCCTACCTCTTCACACTCTTTCTTTTCATCCTCTTCGTCGCCGTCCTCTATGGTGAAGATTTCATGTGCATTTTTGGTGAACAACTCCAACTTTATTCCACCGCCGACACATTTTTCGCTTCTTCCTCCTCCTCCTCTTCCTCTTCGCAGAGGGTGAAGAGGGAGCGGAAACTGCCATTTGCGGTGGGAAAGACGGAGGAAGGATGCGACGTGTTCAGCGGACGGTGGGTGAGGGACGAGACGAGGCCGTTGTACGAGGAAGCGGACTGTCCGTACATACAGCCTCAGCTGACGTGTCAGGAGCACGGTCGACCGGACACCGGCTACCGGCAATGGAGGTGGCAACCTCACGGTTGCGATCTTCCCAAATTCAACGCGAGCATGATGCTTGAGACACTTCGAGGGAAGAGGATGATGTTTGTGGGAGACTCCCTGAATCGTGGTCAATTTGTTTCTTTTGTTTGCCTTCTCCATCACCTCATTCCTCCTCATCAAAAGTCCATGCAAACCTTTGATCATGATTCACTCACTGTATTCACAGCCAAGGAATATAATGCGACAATTGAGTTCTATTGGGCACCATTTCTTCTTGAATCAAACTCAGACAACGCAGTGGTTCATAGGATATCAGATAGGGTAGTGAGAAAGGGTTCAATCAACAAGCATGGTCAACATTGGAAAAACGTTGACATTATGGTGTTCAACACTTATCTTTGGTGGATGACTGGCTTGAAGATGAAGATCTTGCTTGGATCTTTTGATGATGAAGTGAAAGAGATAGTGGAGGTATCAACAGAAGATGCTTATCGTATGGGTATGAAAAGCATGCTTAGATGGGTGAAGTTGAATATGGACCCCAAGAAAACTAGAGTCTTCTTCACCAGCATGTCACCTTCTCATCAAAAAAGTATAGATTGGGGAGGTGAAGCAGGAAAGAATTGCTATAATGAAACAAGTATGATRGAAGATCCAAATTATTGGGGCTCAGATTCTAGGAAGAGCATAATGSAAGTGATTGGAGAAGTGTTCAAAAAATCCAAAGTTCCCATAACATTYCTTAACATKACACAGCTATCTAGTTACAGAAAAGATGCACARACTTCAATATACAAGAAGCAATGGAGCCCCTTGACACCAGAACAATTAGCAAACCCTGTTAGCTATGCTGATTGTGTTCATTGGTGTTTGCCTGGCCTTCAAGACACTTGGAATGAGCTTTTGTTTGCAAAGTTATTCTATCCTTAA 1317 0.4457 MKPPFSPPSSSSSLLSLRGKGRLSPYLFTLFLFILFVAVLYGEDFMCIFGEQLQLYSTADTFFASSSSSSSSSQRVKRERKLPFAVGKTEEGCDVFSGRWVRDETRPLYEEADCPYIQPQLTCQEHGRPDTGYRQWRWQPHGCDLPKFNASMMLETLRGKRMMFVGDSLNRGQFVSFVCLLHHLIPPHQKSMQTFDHDSLTVFTAKEYNATIEFYWAPFLLESNSDNAVVHRISDRVVRKGSINKHGQHWKNVDIMVFNTYLWWMTGLKMKILLGSFDDEVKEIVEVSTEDAYRMGMKSMLRWVKLNMDPKKTRVFFTSMSPSHQKSIDWGGEAGKNCYNETSMXEDPNYWGSDSRKSIMXVIGEVFKKSKVPITFLNXTQLSSYRKDAQTSIYKKQWSPLTPEQLANPVSYADCVHWCLPGLQDTWNELLFAKLFYP* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0227 438 PANTHER PMR5 DOMAIN, PC-ESTERASE, PROTEIN TRICHOME BIREFRINGENCE-LIKE 32/46-RELATED 13 438 - -
Amo17g0227 438 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 13 438 IPR029962 GO:0016413
Amo17g0227 438 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 145 433 IPR026057 GO:0016740
Amo17g0227 438 Pfam PMR5 N terminal Domain 92 144 IPR025846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0227 Amo-Chr17 3263436 3267596 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0227 - - gmx:100785571 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0227 17 3263436 3267596 Amo17g0227 17 3263436 3267596 ECH
Amo20g1356 20 29236129 29240918 Amo17g0227 17 3263436 3267596 PCT
Amo10g1008 10 18849300 18857316 Amo17g0227 17 3263436 3267596 PCT
Amo17g0227 17 3263436 3267596 Amo20g1356 20 29236129 29240918 PCT
Amo17g0227 17 3263436 3267596 Amo10g1008 10 18849300 18857316 PCT