Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4424 ATGTGGCCGTTCAACAGAAAAGGTCCTTCTGGATTCTCATCTTCTTCTACCGCCGAAGAGGTCACCGCAGGCATCGATGCTACTGGCCTGACTGCCATCGTCACAGGAGCCAGCAGTGGAATTGGCTCTGAGACTGCGCGTGTTCTTGCTTTGCGCGGTGCTCATGTCGTTATGGGGGTCAGAAACTTGACGGCTGCTAAACAAGTTCAACAATCAATACTCAAGGACAATCCCTCAGCCAAACTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCACAATATAAATCCTCTGGTCGTCCTCTCAACATATTAATAAACAATGCTGGAATTATGGCATGCCCCTTCACGCTCTCCAAAGACAACATTGAACTACAGTTTGCCACAAATCACATCGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACAATGAAGAAAACATCACGCCAGAGTAAGAGAGAAGGAAGAATTGTTAATGTGTCCTCCGAGGCTCACCGTTTTACTTATTCTGAAGGAATTCGTTTTGACAAAATCAACGACGAATCAAGTTACCACAGCTGGCGTGCTTATGGGCAGTCCAAGCTAGCAAACATCTTACATGCTAATCAACTCACAACACGTCTTAAGGAAGACGGGGCTGATATTACTGCGAATTCTCTTCATCCGGGAACCATTGCCACCAACCTTTTCCGTCATATGGGTGTGGCCAATGGTATAGTTAATGCAATTGGGAGACTTGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGCAAATACTTCTCTGATAGCAATCTGTCCAAAACAACCTCCCATGGAACTGATGCTGATTTGGCTAAGAAACTCTGGGATTTCAGTATGAATTTGATCAAGTAG 942 0.4437 MWPFNRKGPSGFSSSSTAEEVTAGIDATGLTAIVTGASSGIGSETARVLALRGAHVVMGVRNLTAAKQVQQSILKDNPSAKLDAMELDLSSMESVKKFASQYKSSGRPLNILINNAGIMACPFTLSKDNIELQFATNHIGHFLLTNLLLDTMKKTSRQSKREGRIVNVSSEAHRFTYSEGIRFDKINDESSYHSWRAYGQSKLANILHANQLTTRLKEDGADITANSLHPGTIATNLFRHMGVANGIVNAIGRLVLKNVQQGAATTCYVALHPQVKGVSGKYFSDSNLSKTTSHGTDADLAKKLWDFSMNLIK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4424 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Amo19g4424 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Amo19g4424 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Amo19g4424 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Amo19g4424 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Amo19g4424 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Amo19g4424 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Amo19g4424 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Amo19g4424 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Amo19g4424 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Amo19g4424 313 Gene3D - 22 313 - -
Amo19g4424 313 Pfam short chain dehydrogenase 31 177 IPR002347 -
Amo19g4424 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4424 Amo-Chr19 161315365 161317207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4424 31 183 Acyl Lipid Metabolism Gene Families AT1G62610 30.625 7.48e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4424 - - gmx:100784001 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4424 19 161315365 161317207 Amo19g4424 19 161315365 161317207 ECH
Amo19g4424 19 161315365 161317207 Amo09g2813 09 107196747 107198174 hybridization
Amo19g4423 19 161313182 161314767 Amo19g4424 19 161315365 161317207 PCT
Amo19g4424 19 161315365 161317207 Amo19g4424 19 161315365 161317207 PCT
Amo09g2813 09 107196747 107198174 Amo19g4424 19 161315365 161317207 PCT