Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g2813 ATGTGGCCGTTCAACAGAAAAGGGCCTTCTGGATTCTCATCTTCTTCTACCGCCGAAGAGGTCACCGCAGGCATCGATGCTACTGGCCTCACTGCCATCGTCACAGGAGCCAGCAGTGGAATTGGCTCTGAGACTGCGCGTGTTCTTGCTTTGCGCGGTGCTCATGTCGTTATGGGGGTCAGAAACTTGACGGCTGCTAAACAAGTTCAACAATCAATACTCAAGGACAATCCCTCTGCCAAACTTGATGCCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCACAATATAAATCCTCTGGTCGTCCTCTCAACATATTAATAAACAATGCTGGAATTATGGCATGCCCCTTCACGCTCTCCAAAGACAACATTGAACTACAGTTTGCCACAAATCACATCGGTCATTTTCTTTTGACAAATCTTTTGTTGGATACAATGAAGAAAACATCACGCCAGAGTAAGAGAGAAGGAAGAATTGTTAATGTGTCCTCCGAGGCTCACCGTTTAACTTATTCTGAAGGAATTCGTTTTGACAAAATCAACGACGAATCAAGTTACCACAGCTGGCGTGCTTATGGGCAGTCCAAGCTAGCAAACATCTTACATGCTAATCAACTCACAACACTTCTTAAGGAAGACGGGGCTGATATTACTGCGAATTCTCTTCATCCGGGAACCATTGCCACCAACCTTTTCCGTCATATGGGTGTGGCCAATGGTATAGTTAATGCAATTGGGAGACTTGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGCAAATACTTCTCTGATAGCAATCTGTCCAAAACAACCTCCCATGGAACTGATGMTGATTTGGCTAAGAAACTCTGGGATTTCAGTATGAATTTGATCAAGTAG 942 0.4427 MWPFNRKGPSGFSSSSTAEEVTAGIDATGLTAIVTGASSGIGSETARVLALRGAHVVMGVRNLTAAKQVQQSILKDNPSAKLDAMELDLSSMESVKKFASQYKSSGRPLNILINNAGIMACPFTLSKDNIELQFATNHIGHFLLTNLLLDTMKKTSRQSKREGRIVNVSSEAHRLTYSEGIRFDKINDESSYHSWRAYGQSKLANILHANQLTTLLKEDGADITANSLHPGTIATNLFRHMGVANGIVNAIGRLVLKNVQQGAATTCYVALHPQVKGVSGKYFSDSNLSKTTSHGTDXDLAKKLWDFSMNLIK* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g2813 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Amo09g2813 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Amo09g2813 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Amo09g2813 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Amo09g2813 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Amo09g2813 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Amo09g2813 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Amo09g2813 313 Gene3D - 22 313 - -
Amo09g2813 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
Amo09g2813 313 Pfam short chain dehydrogenase 31 177 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g2813 Amo-Chr9 107196747 107198174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g2813 31 170 Acyl Lipid Metabolism Gene Families AT1G62610 31.724 7.99e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g2813 - - gmx:100784001 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4424 19 161315365 161317207 Amo09g2813 09 107196747 107198174 hybridization
Amo19g4423 19 161313182 161314767 Amo09g2813 09 107196747 107198174 PCT
Amo09g2813 09 107196747 107198174 Amo19g4424 19 161315365 161317207 PCT