Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g4423 ATGTGGCTATTCAGCAGCAAAGGGCCTTCTGGATTCTCCTCTTATTCCACCGCCGAAGAGGTCACCCAAGGCATCAACGCCTCTGGCCTCACTGCCATCGTCACAGGAGCAACTAGTGGAATTGGGGCTGAGACTACACGTGTTCTTGCTCTGCGCGGTGTCCAGGTGGTTATGGGGGTCAGAAACTTGGCTGCTGCTAAAGATGTAAAAGAATCAATTCTTAAAGAGGTTCCCTCTGCTAAAGTTGATGCCATGGAGTTGGATCTCAGTTCATTGGAGTCTGTCAAGAAATTTGCATCAGAGTTTAATTCCTCTGGTCTTCCTTTGAACATCCTCATAAACAATGCAGGAATTATGGCATGCCCCTTCATGCTATCGAAGGACAACATTGAGCTGCAATTTGCCACAAATCACTTAGGTCACTTTCTTTTAACAAATCTTTTGTTGGATACTATGAAGAAGACATCACATGAAAGTAAGAAAGAAGGGAGAATTTTACAGCAGCTGGCGTGCATATGGGCAGTCAAAGCTAGCCAACATGTTACATGCTAA 552 0.4493 MWLFSSKGPSGFSSYSTAEEVTQGINASGLTAIVTGATSGIGAETTRVLALRGVQVVMGVRNLAAAKDVKESILKEVPSAKVDAMELDLSSLESVKKFASEFNSSGLPLNILINNAGIMACPFMLSKDNIELQFATNHLGHFLLTNLLLDTMKKTSHESKKEGRILQQLACIWAVKASQHVTC* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g4423 183 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 167 - -
Amo19g4423 183 Gene3D - 20 175 - -
Amo19g4423 183 PANTHER RETINOL DEHYDROGENASE 2 167 - -
Amo19g4423 183 Pfam short chain dehydrogenase 31 166 IPR002347 -
Amo19g4423 183 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Amo19g4423 183 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Amo19g4423 183 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 157 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g4423 Amo-Chr19 161313182 161314767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g4423 29 118 Lipid Metabolism Gene Families AT1G24470 37.778 3.50e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g4423 - - gmx:100796920 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g4423 19 161313182 161314767 Amo19g4423 19 161313182 161314767 ECH
Amo19g4423 19 161313182 161314767 Amo19g4424 19 161315365 161317207 PCT
Amo19g4423 19 161313182 161314767 Amo09g2813 09 107196747 107198174 PCT