Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g2353 ATGTCTCGAATACTCTTCACTACATGGAACAAGCACAGAAACAAGCTTCATCCCAACCCAAAAATCCTTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCACATGCCTACTTCACCCTTTCACCCCATCATCATCATCATCAGCAGCAGCAGCGTCACCGCGTCCTCGCCAACACCAGCACTTTCTTGTTCTACCATAGGCTACTCCAGCACCGCCACAAATGGGGCCGTGGAGGCTCGGACGACCCGATTACTCGGTCCCGGAGGATCCGAGCCGATCCGAATTGCCCACGCTGCTCCAGGGACATGATTGTAATTGACAACCTCAAGCTCCCAACTCGCCAGGGAGGTCACCAATTCAATGGTACTGTGAACCTTTGCCCCAATTGCAACGCTGCCTATTACTTCAGCCCTCATGGCGTTGCGCCTCTTCAAGGTAGCTTTTTGGAGATTGGGGCTCAGAGGGTTTCTGAAAAAAACGATCTTGATGATGATGATGATGATGTTGATTTTGATTCTACTAAGGTGCCTAGGAGAATCAGTGGGTTTGGTGGTAGAGTGTTGAATAGTAATGGTGGTGGTGGTGGTGATGGGGATAGTAATGCACCTGGTTCAGGTGATGGGAATGGTGGTGGTGGTGGTGTTGCTGTGCATAGTCCTCCAGGGCCACCTTTTGCTCCTGGTGTTAATGTTATAAGGGCTTCTGGGCCCCGAGAAGGTGGTTCCGGTGGCGGCAGTGGCAGTGAGAAGAGTTCATGGGGTGGTTCCAATTTGGGGAGGGACTTGCCAACTCCAAAGGAGATCTGTAAGGGTCTTGACAAGTTTGTAATTGGCCAGGACAGGGCCAAAAAGGTTCTATCAGTAGCTGTTTATAACCACTACAAAAGAATATACCATGCTTCTCAACAGAAAGGGTCAGAGGCTGATTCTGGAATTCCAGAAGGATTAGATAATGATGATGTCGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCAGGGAAGACATTACTTGCTAAGACGCTAGCTCGGTTCGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACTCAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAATTACTGGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATAGTCTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATTAGCCGAGATGTTTCAGGCGAGGGTGTTCAGCAGGCACTATTAAAAATGCTGGAAGGAACTGTAGTAAATGTTCCTGAGAAAGGAGCAAGGAAACATCCACGAGGTGATAATATACAGATCGACACAAAGAATATTCTTTTTATATGTGGGGGTGCCTTCATTGATCTTGAAAAAACAATTTCAGAGAGACGACATGATTCTTCCATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGGACTGGTCAACTAACAAATGCAGCCATAGCATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCGATTTTAATTAGCTTGTCAGCTTTAACTGAAGAACAGCTTATGCAGGTCCTCTCAGAACCGAAAAATGCACTCTCTAAGCAGTACAAGAAATTATTTAGCATGAATAATGTAAAACTACACTTCACAGAGAAAGCTATGAGATTGATCGCCAAGAAAGCAATGGCAAAAAATACTGGCGCCAGGGGTTTAAGAGCCCTACTGGAAAACATTTTAACTGAAGCCATGTATGAGATTCCAGATGTCAAGACAGGAAACGAACAGATTGATGCAGTTGTTGTCGATGAGGAATCAGTAGGATCGGTAAATGCCGTCGGTTGCGGAGGAAAAATTCTCCGCGGCGAAGGTGCTTTGGAGCGGTACCTTGCTAAGATGGAGGACTCAAAGGTTAAGGGTGATGTAGCTGAATCTGACATGCAAGATGGGGAACAAGAGATCACATCAAGAGCAATGAGCATGTAA 2037 0.4546 MSRILFTTWNKHRNKLHPNPKILSSSSSSSSSSHAYFTLSPHHHHHQQQQRHRVLANTSTFLFYHRLLQHRHKWGRGGSDDPITRSRRIRADPNCPRCSRDMIVIDNLKLPTRQGGHQFNGTVNLCPNCNAAYYFSPHGVAPLQGSFLEIGAQRVSEKNDLDDDDDDVDFDSTKVPRRISGFGGRVLNSNGGGGGDGDSNAPGSGDGNGGGGGVAVHSPPGPPFAPGVNVIRASGPREGGSGGGSGSEKSSWGGSNLGRDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASQQKGSEADSGIPEGLDNDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRHDSSIGFGAPVRANMRTGQLTNAAIASSLLESVESADLIAYGLIPEFIGRFPILISLSALTEEQLMQVLSEPKNALSKQYKKLFSMNNVKLHFTEKAMRLIAKKAMAKNTGARGLRALLENILTEAMYEIPDVKTGNEQIDAVVVDEESVGSVNAVGCGGKILRGEGALERYLAKMEDSKVKGDVAESDMQDGEQEITSRAMSM* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g2353 678 MobiDBLite consensus disorder prediction 157 262 - -
Amo19g2353 678 PANTHER OS01G0886600 PROTEIN 77 674 - -
Amo19g2353 678 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 77 674 - -
Amo19g2353 678 Pfam AAA domain (Cdc48 subfamily) 323 527 IPR003959 GO:0005524|GO:0016887
Amo19g2353 678 Gene3D - 256 532 IPR027417 -
Amo19g2353 678 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 259 624 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Amo19g2353 678 CDD AAA 324 482 - -
Amo19g2353 678 SMART ClpB_D2_small_2 534 627 IPR019489 -
Amo19g2353 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 620 IPR027417 -
Amo19g2353 678 MobiDBLite consensus disorder prediction 657 678 - -
Amo19g2353 678 Pfam C-terminal, D2-small domain, of ClpB protein 534 604 IPR019489 -
Amo19g2353 678 Gene3D - 533 632 - -
Amo19g2353 678 SMART AAA_5 323 485 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g2353 Amo-Chr19 107723506 107729977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g2353 327 426 Miscellaneous Gene Families AT3G02450 36.634 4.41e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g2353 K03544 - qsu:112016309 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2353 19 107723506 107729977 Amo19g2353 19 107723506 107729977 ECH
Amo19g2353 19 107723506 107729977 Amo09g1942 09 81741044 81750535 hybridization
Amo05g3164 05 93137442 93144917 Amo19g2353 19 107723506 107729977 PCT
Amo19g2353 19 107723506 107729977 Amo05g3164 05 93137442 93144917 PCT