Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g1942 ATGTCTCGAATACTCTTCACTACATGGAACAAGCACAGAAACAAGCTTCATCCCAACCCAAAAATCCTTTCTTCTTCTCCTTCTTCTTCTTCACATGCCTACTTCGCCCTTTCGCCCCATCATCATCAGCAGCAGCAGCAGCGTCACCGCGTCCTCGCCAACACCAGCACTTTCTTGTTCTACCATAGGCTACTCCAGCACCGCCAAAAATGGGGCCGTGGAGGCTCGGACGACCCGATTACCCGGTCCAGGAGGATCCGAGCCGATCCGAATTGCCCACGCTGCTCCAGGGACATGATTGTAATTGACAACCTCAAGCTCCCAACTCGCCAGGGAGGTCACCAATTCAATGGTACTGTGAACCTTTGCCCCAACTGTAACGCTGCCTATTACTTCAGCCCTCATGGCGTTGCGCCTCTTCAAGGTAGCTTTTTGGAGATTGGGGCTCAGAGGGTCTCTGAAAAAAACGATCTTGATGATGATGATGATGATGTTGATTTTGATTTTACTAAGGTGCCTAGGAGAATCAATGGGTTTGGTGGTAGAGTGTTGAATAGTAATGGTGGTGGTGGTGGTGATGGGGATAGTAATGCACCTGGTTCAGGTGATGGGAATGGTGGTGGTGGTGGTGTTGCTGTGCATAGTCCTCCAGGGCCACCTTTTGCTCCTCGTGTTAATGTTATAAGGGCTTCTGGGCCCCGAGAAGGTGGTTCCGGTGGCAGCAGTGGAAGTGAGAAGAGTTCATGGGGTGGTTCCAATTTGGGGAGGGACTTGCCAACTCCAAAGGAGATCTGTAAGGGTCTTGACAAGTTTGTAATTGGTCAGGACAGGGCCAAAAAGGTTCTATCAGTAGCTGTTTATAACCACTACAAAAGAATATACCATGCTTCTCAACAGAAAGGGTCAGAGGCTGATTCTGGAATTCCAGAAGGATTAGATAATGATGATGTCGAGCTGGAAAAGAGTAATGTTCTCTTGATGGGTCCAACAGGGTCCGGGAAGACATTACTTGCTAAGACGCTAGCTCGGTTCGTGAATGTTCCATTTGTCATTGCTGATGCAACAACCTTAACTCAGGCTGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAATTACTGGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATAGTCTACATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATTAGCCGAGATGTTTCAGGCGAGGGTGTTCAGCAGGCACTATTAAAAATGCTGGAAGGAACTGTAGTAAATGTTCCTGAGAAAGGAGCAAGGAAACATCCACGAGGTGATAATATACAGATCGACACAAAGAATATTCTTTTTATATGTGGGGGTGCCTTCATTGATCTTGAAAAAACAATTTCAGAGAGACGACATGATTCTTCCATTGGTTTTGGAGCACCAGTTCGTGCCAATATGAGGACTGGTCAACTAACAAATGCAGCCATAGCATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCGATTTTAATTAGCTTGTCAGCTTTAACTGAAGAACAGCTTATGCAGGTTCTCTCAGAACCGAAAAATGCACTCTCTAAGCAGTACAAGAAATTATTTAGCATGAATAATGTCAAACTACACTTCACAGAGAAAGCTATGAGATTGATCGCCAAGAAAGCAATGGCAAAAAATACTGGCGCCAGGGGTTTAAGAGCCCTACTGGAAAACATTTTAACTGAAGCCATGTATGAGATTCCAGATGTCAAGACAGGAAACGAACAGATTGATGCAGTTGTTGTCGATGAGGAATCAGTAGGATCAGTTAACGCCGTTGGTTGCGGAGGAAAAATTCTCCGCGGCGAAGGTGCTTTGGAGCGGTACCTTGCTAAGATGGAGGACTCAAAGGTTAAGGGTGATGTAGCTGAATCTGACTTGCAAGATGGGGAACAAGAGATCACATCAAGAGCAATGAGCATAACAAGGATGCATAGTACCTTGGTGAAATATCTGCAACCCTTCTCTCCATCAGTGACAAGAAGCAACTTCAGTTTGTCATGCCAGAGGGACATAACAACTTCTTCCTTCTCAGCATCTCCTTGTATTCGGTTTCCTCATTCCCTTGACCCAAGATTTCAACAAATTTTCAAGAATCCCAGTCCAAGTTCTCATTTATAG 2223 0.4507 MSRILFTTWNKHRNKLHPNPKILSSSPSSSSHAYFALSPHHHQQQQQRHRVLANTSTFLFYHRLLQHRQKWGRGGSDDPITRSRRIRADPNCPRCSRDMIVIDNLKLPTRQGGHQFNGTVNLCPNCNAAYYFSPHGVAPLQGSFLEIGAQRVSEKNDLDDDDDDVDFDFTKVPRRINGFGGRVLNSNGGGGGDGDSNAPGSGDGNGGGGGVAVHSPPGPPFAPRVNVIRASGPREGGSGGSSGSEKSSWGGSNLGRDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHASQQKGSEADSGIPEGLDNDDVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRHDSSIGFGAPVRANMRTGQLTNAAIASSLLESVESADLIAYGLIPEFIGRFPILISLSALTEEQLMQVLSEPKNALSKQYKKLFSMNNVKLHFTEKAMRLIAKKAMAKNTGARGLRALLENILTEAMYEIPDVKTGNEQIDAVVVDEESVGSVNAVGCGGKILRGEGALERYLAKMEDSKVKGDVAESDLQDGEQEITSRAMSITRMHSTLVKYLQPFSPSVTRSNFSLSCQRDITTSSFSASPCIRFPHSLDPRFQQIFKNPSPSSHL* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g1942 740 MobiDBLite consensus disorder prediction 178 259 - -
Amo09g1942 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 617 IPR027417 -
Amo09g1942 740 SMART AAA_5 320 482 IPR003593 -
Amo09g1942 740 SMART ClpB_D2_small_2 531 624 IPR019489 -
Amo09g1942 740 PANTHER OS01G0886600 PROTEIN 74 659 - -
Amo09g1942 740 Pfam AAA domain (Cdc48 subfamily) 320 524 IPR003959 GO:0005524|GO:0016887
Amo09g1942 740 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 255 621 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Amo09g1942 740 Gene3D - 530 629 - -
Amo09g1942 740 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 74 659 - -
Amo09g1942 740 MobiDBLite consensus disorder prediction 237 254 - -
Amo09g1942 740 CDD AAA 321 479 - -
Amo09g1942 740 Pfam C-terminal, D2-small domain, of ClpB protein 531 601 IPR019489 -
Amo09g1942 740 Gene3D - 253 529 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g1942 Amo-Chr9 81741044 81750535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g1942 324 423 Miscellaneous Gene Families AT3G02450 36.634 5.18e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g1942 K03544 - qsu:112016309 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g2353 19 107723506 107729977 Amo09g1942 09 81741044 81750535 hybridization
Amo05g3164 05 93137442 93144917 Amo09g1942 09 81741044 81750535 PCT
Amo09g1942 09 81741044 81750535 Amo05g3164 05 93137442 93144917 PCT