LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo05g3164	ATGTCACGAATCTTCTCGAGATGGAAGAAGGTGAAGGAAGTGGCGTCACTCTCCGACACCCATTTGGTCGATTCTCCGGTTAACATGACCCGAATTCGGAACCGAACCGGTTTGAATTACCGYTTCAACCGTWTGCGCCCAATCTCGACCCATCTGAATCACCATATCCACATCACTGGCGGGGTCGGACATCATCGCCGGCGGGAGGCACTCGTCGGAGTTCAGGAGCGGTACAAATGGGACCGGGGTGGATCCGATGACAACCCGATCCGGAAGATTCGGGCAGAGGCAAACTGCCCGCGTTGCAGCAAGGACATGAACCTCGTATTCTCCAATCGCCATTTTCCGACCACATCAGCTTCTGATTCTGATTCAGGTTCTGGTTCGAGTTTGGCGCTACATGTTCCTGTGAATGGTGGTGGAGAAGWTGGTAGTGCTGGTTACCAAGCGGTGAATCTGTGTCCAACTTGCAAAACCGCTTATTACTTTAAACCTTTCAGCACTTCACCATTGCAAGGTACCTTTGTGGAGATTGGGAGGGTAACTAATAGTGGCAGCAATGGCAATGGCAATGGCAATGGCAGTGGCAAATCTCAATCTTCTAGGAGGATCACACATGGGAAGAATGTTGGTGGTGGTAAAGAGGGTGGTGGAAATAGTAGTGGTCATGGTGGTGGTGATGGTGAAGATTATGGTTCTAAGAATGGTGGTGGTGGTAGCTGGCTTGAGGCTTCATTGTGGGACACTTTAAGGTCCTACAATGGTGGTGGTGGTGGTAATAGTGGGGAGCCACCTGAGGTATGGCCTCCACCACCAGGTGGTAACAATGTGAATGGTTTGGCTGTTCATAATCCTCCAGGGCCGCCTTTCATGCATGGGATGAATATCCGTGCTCCGGGGTCCCGGGAAGGTGGCTCTGGCGGTAGAGGTGGAGGTGGCGGAAATGAAGAAAAGACTTCTTGGGGAGGGTCTAATTTGGGTAAGGATTTGCCATCCCCAAAGGAGATTTGTAAGGGACTTGACAAGTTTGTAATTGGACAAGAGAGAGCTAAGAAGGTGCTTTCTGTAGCTGTTTATAACCACTATAAAAGAATATACCACTCCACTTTGCAGAAAGGGTCAGGGGCAGATCCTGGAGTTTCAGAGGGGTTAGATGATGACGATAATGTTGAGCTAGAAAAGAGTAATGTTCTTCTCATGGGTCCAACAGGATCAGGGAAGACGCTACTCGCGAAAACACTAGCTAGATTTGTGAATGTTCCGTTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATACTGTACAAACTACTTGCGGCAGCAGACTTCAATGTTGCAGCAGCTCAACAAGGGATAATTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAATATCAGCCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCATTATTAAAAATGCTTGAAGGAACTATAGTAAATGTTCCTGAGAAAGGGGCTAGGAAGCATCCGCGGGGTGATAACATACAGATGGACACAAAGAATATTCTTTTCATTTGTGGCGGAGCATTTATTGATCTTGAAAAGACAATTTCAGAGAGACGGCAAGATTCTTCTATTGGTTTTGGAGCCCCAGTTCGTGCCAACATGAGAGCTGGTGGAATAATTGATGCTGTACTAACATCATCTTTACTTGAGTCGGTGGAGAGTTCCGATCTTATTGCATATGGTCTCATACCAGAGTTTATTGGACGATTTCCCATCTTAGTGAGCTTGACAGCTTTAACTGAAGAGCAACTTATGCTGGTCCTATCAGAACCAAAGAATGCTCTTGGAAAGCAGTACAAGAAATTATTCAGCATGAATGATGTAAAGCTACACTTCACAGATAAAGCTCTCAGACTGATTGCACAGAAAGCAATGGCCAAAAATACCGGTGCCAGAGGTTTAAGAGCTCTACTCGAAAGTATTTTAACCGACACAATGTTTGAGGTTCCAGAACTTAAGACCGGAGATGAACGAATCGATGCAGTAGTTGTTGATGAAGAGTCAGTAGGATCAATAAACGCCCCTGGATGTGGAGGAAAAATTCTTCGTGGAGACAATGCTTTGGAGAAATACCTCGCTAAGATGAAGGATTCACAGGAAAATGTTAACTTAGCTGAATCAGACTCACAAGATGGAGATTCAGAGCTTTCATCAAGGGCCATGAGCTTGTAA	2247	0.4602	MSRIFSRWKKVKEVASLSDTHLVDSPVNMTRIRNRTGLNYRFNRXRPISTHLNHHIHITGGVGHHRRREALVGVQERYKWDRGGSDDNPIRKIRAEANCPRCSKDMNLVFSNRHFPTTSASDSDSGSGSSLALHVPVNGGGEXGSAGYQAVNLCPTCKTAYYFKPFSTSPLQGTFVEIGRVTNSGSNGNGNGNGSGKSQSSRRITHGKNVGGGKEGGGNSSGHGGGDGEDYGSKNGGGGSWLEASLWDTLRSYNGGGGGNSGEPPEVWPPPPGGNNVNGLAVHNPPGPPFMHGMNIRAPGSREGGSGGRGGGGGNEEKTSWGGSNLGKDLPSPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIYHSTLQKGSGADPGVSEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAADFNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTKNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRAGGIIDAVLTSSLLESVESSDLIAYGLIPEFIGRFPILVSLTALTEEQLMLVLSEPKNALGKQYKKLFSMNDVKLHFTDKALRLIAQKAMAKNTGARGLRALLESILTDTMFEVPELKTGDERIDAVVVDEESVGSINAPGCGGKILRGDNALEKYLAKMKDSQENVNLAESDSQDGDSELSSRAMSL*	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo05g3164	748	SMART	AAA_5	393	589	IPR003593	-
	Amo05g3164	748	Pfam	C-terminal, D2-small domain, of ClpB protein	604	675	IPR019489	-
	Amo05g3164	748	Coils	Coil	713	733	-	-
	Amo05g3164	748	MobiDBLite	consensus disorder prediction	727	748	-	-
	Amo05g3164	748	CDD	AAA	394	505	-	-
	Amo05g3164	748	MobiDBLite	consensus disorder prediction	180	206	-	-
	Amo05g3164	748	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	49	235	-	-
	Amo05g3164	748	TIGRFAM	clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX	326	695	IPR004487	GO:0005524\|GO:0006457\|GO:0051082\|GO:0140662
	Amo05g3164	748	MobiDBLite	consensus disorder prediction	114	132	-	-
	Amo05g3164	748	Pfam	AAA domain (Cdc48 subfamily)	393	597	IPR003959	GO:0005524\|GO:0016887
	Amo05g3164	748	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	329	688	IPR027417	-
	Amo05g3164	748	SMART	ClpB_D2_small_2	604	697	IPR019489	-
	Amo05g3164	748	MobiDBLite	consensus disorder prediction	180	332	-	-
	Amo05g3164	748	PANTHER	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	296	747	-	-
	Amo05g3164	748	Gene3D	-	324	602	IPR027417	-
	Amo05g3164	748	MobiDBLite	consensus disorder prediction	114	145	-	-
	Amo05g3164	748	Gene3D	-	603	703	-	-
	Amo05g3164	748	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	49	235	-	-
	Amo05g3164	748	PANTHER	ATPASE, AAA-TYPE, CORE-RELATED	296	747	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo05g3164	Amo-Chr5	93137442	93144917	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo05g3164	397	496	Miscellaneous Gene Families	AT3G02450	37.624	8.94e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo05g3164	K03544		-	gmx:100805340	992.26

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo05g3164	05	93137442	93144917	Amo19g2353	19	107723506	107729977	PCT
	Amo05g3164	05	93137442	93144917	Amo09g1942	09	81741044	81750535	PCT
	Amo19g2353	19	107723506	107729977	Amo05g3164	05	93137442	93144917	PCT
	Amo09g1942	09	81741044	81750535	Amo05g3164	05	93137442	93144917	PCT