LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo19g1033	ATGAATTTGCAACAAGTGGGGCAATCTAAATCATCTAATGGATATGGTCGTCGGAAGTATGAAAAAGGAGCAACTAAGTCTGACAGTAAAATCTCATCTGGAAAATCAAATACCAGCAGTGTAGCTGAAGTGACTGGCAGTAAAAGTGGTACTTATGAGAGTCCGTCACATGATCGGCTAGTGTATGTAACATCATCTCTTCTTGGGCATCATGTAGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGAGAAAGATTTTGGAATAATTTTAAAAGTGGCTCGCCTGATAAAGGATAGCTCTTTGCAAGGGCAAAGATCCAGTGTAGAAATTGTCAGCAAGGCTACTTCTAAGACTTTAATTATACCTTCCAAAGAGCTTGTACAAGTCATAGCGAAGGATGTTGCTGTTACTAGGGATGGCCAGCCTAGTGAATCTCATTATGCTATGCATCAGGATATAATGGTTGATTCAGTTATATCTCAATCTCGCCATGTCGAGATGGGGAGAGAATTACAACGATGGGTACCTGATGATGATGATCCACAATGCCCTGAACTGGAAAATATCTTTGATGGCCCTTGGAATAGGGGATGGGATCAGTTTGAAACAAATAAAACGTTGTTTGGTGTAAATAGCACATTCAATGAAGACCTCTACACAACAAAACTTGAAAAAGGGCCTCAGATGAAAGAGCTGGAACAAAAAGCTTTAAGAATAGCAAAAGAAATTGAAGGGGAGGATACCCATGATCTTCATCTGGCAGAGGAAAGAGGCCGTTATCATGATGATTTTGATAGTGATGAAGAAACCAGATTCTCTTCAGTATATAGGGGAAAAGGTGTTGATGACAGTGGATATGATGAAGATGAGGAACCAAGGTTGGATTCATACAATTCTGAAACATTTGGCAGCATCACAGGTTCGGTCATTAAGAAGCCGGGTGAAACAAGTGGTGGAAAAGCCAACAATGGAGCACAAACTTGGTCAAACTTCTCTAAAATGGATCACTCACAGTCATCTCTGTCAAATATTGGTGTGGATTTAGGCCGCTCTGGTGCTGATGATCATGCTAAGCAATTAGCATCTGAACTCTCTACTCAAAATTACTCATTTCAAGATGGAGAATGCAGGATTCAGAATTGTGTTAGTGATCCAAATGAAACCAGTGGTAATGCCACAGAAGAAAATCAGCAAGCTGAGGATGTCCGCCTGTCAAAATCTGAGGATTTACAGCCACCACATAACTTGAAGAATGTCGTCTCTGTCTCTGATAAGGGGGAATCATTGCCTAATACCACCTCCTTTACCCCTTCACCACATATTATATCAAAGGGTCTTGAAAAAACTGGGTTATGTGGGGAGTTTACTACTGGGACTTCAGCATCTGGCAGATCTAGTGAGCAAACAAAAGCTGCAAATTCACGTGGAAGAGTAGGTAGTGCCTCATCATCTGGTTCAGATAATGTGGGCGGTGTGGCCGCATCTTCTGGTTCTGGTCTATCTCCGAGTTCTTCAGTTGGATCATTGTCTTCTGAAAGATCTACTTTGAATCCCCATGCCAAGGAATTCAAGCTTAATCCTAATGCCAAGAGTTTTATTCCGTCCCAAAATCCTGTTAGGTCCCGATCCCCAGTCTCTGATGGTTCCTTCTATTTCCCAGCTAATGTATCTACTGTACCAAATATGCCCGCGATGCCCATGGGTATTGGAGTTGGTAATACTTTTGCTGGGCCACCACAGCCTATGATATATAATCCGCAGGTAGCACAAATGCCATCCCAAGCATATTTTCATCCAAATGGACCACAGTATGGACAGCTTCTTGGTCATCCTAGGCAGGTTTTGTACATGCCAAGCTACCTACCTGAAACGCCGTATAAGGGACGAGATTATTGA	1923	0.4186	MNLQQVGQSKSSNGYGRRKYEKGATKSDSKISSGKSNTSSVAEVTGSKSGTYESPSHDRLVYVTSSLLGHHVEVQVKNGSIYSGIFHATNTEKDFGIILKVARLIKDSSLQGQRSSVEIVSKATSKTLIIPSKELVQVIAKDVAVTRDGQPSESHYAMHQDIMVDSVISQSRHVEMGRELQRWVPDDDDPQCPELENIFDGPWNRGWDQFETNKTLFGVNSTFNEDLYTTKLEKGPQMKELEQKALRIAKEIEGEDTHDLHLAEERGRYHDDFDSDEETRFSSVYRGKGVDDSGYDEDEEPRLDSYNSETFGSITGSVIKKPGETSGGKANNGAQTWSNFSKMDHSQSSLSNIGVDLGRSGADDHAKQLASELSTQNYSFQDGECRIQNCVSDPNETSGNATEENQQAEDVRLSKSEDLQPPHNLKNVVSVSDKGESLPNTTSFTPSPHIISKGLEKTGLCGEFTTGTSASGRSSEQTKAANSRGRVGSASSSGSDNVGGVAASSGSGLSPSSSVGSLSSERSTLNPHAKEFKLNPNAKSFIPSQNPVRSRSPVSDGSFYFPANVSTVPNMPAMPMGIGVGNTFAGPPQPMIYNPQVAQMPSQAYFHPNGPQYGQLLGHPRQVLYMPSYLPETPYKGRDY*	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo19g1033	640	PANTHER	ATAXIN 2-RELATED	4	631	IPR045117	GO:0003723
	Amo19g1033	640	PANTHER	ATAXIN-2 HOMOLOG	4	631	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	258	356	-	-
	Amo19g1033	640	Pfam	Ataxin 2 SM domain	57	141	IPR025852	-
	Amo19g1033	640	Pfam	LsmAD domain	217	286	IPR009604	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	538	554	-	-
	Amo19g1033	640	SMART	LsmAD_2	217	287	IPR009604	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	328	355	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	1	55	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	464	554	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	420	449	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	29	55	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	391	407	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	258	305	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	464	525	-	-
	Amo19g1033	640	MobiDBLite	consensus disorder prediction	391	451	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo19g1033	Amo-Chr19	17897545	17906174	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo19g1033	-		-	mtr:MTR_8g019560	807.364

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo19g1033	19	17897545	17906174	Amo19g1033	19	17897545	17906174	ECH
	Amo19g1033	19	17897545	17906174	Amo09g0539	09	7143099	7151855	hybridization
	Amo18g0335	18	4583355	4590081	Amo19g1033	19	17897545	17906174	PCT
	Amo19g1033	19	17897545	17906174	Amo18g0335	18	4583355	4590081	PCT