Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0335 ATGAATTTGCAACAAGCTGGGCAGCCTAAATCTTCTAATGGATATGGGCGTCGAAAATCTGAAAGAGAAGGGGCAACAAAGTCAGAGAACAAAATCCCATCTGGAAAATTAAATTCCGCCAGATTAGCAAGTACAGGTGCTGTGACTGGCTGTAAAGGTGGTGGCTATGAGAGTCCTTCACATGATCGTCTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTTCAGGTGAAAAATGGGTCAATGTACTCTGGAATATTTCATGCAACAAACGCTGACAATGATTTTGGAATTGTTTTGAAAATGGCTCGCTTAATTAAGGATGGTTCTTTAAGAGGGCAGAAGTCTAGTGCAGAACCTGTCAGCAAGGCTCCTTCTAAGATCTTAATTATACCTGCCAAAGAACTTGTACAAGTTATAGCAAAGGGAGTTGCCGTTACTAGGGATGGCCTACCTAGTGAATTGCATCATGATATGCATCAGGAAATCATGGTAGATTCGTTAATATCTCATTCTCGACATGTTGAGTTAGGGAGAGAATTGAAACCCTGGGTACCTGATGAAGATGTTCCACAATGCCCAGAACTGGAAAATACCTTTGATGGTCCTTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCCTTGTTTGGTGTAAAAAGCACATTCAATGAGGAACTATATACAACAAAGCTTGAAAAAGGGCCTCGGACAAGAGAACTGGAAAAACAAGCCTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTGCATCTTGCGGAGGAAAGAGGACTTCACTTTCATGAAAACTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCGCTAGGGGTAAAGGTGTTGATGATAGCGGATATGATGAAAATGAGGACATACTGTCTGATTCACTCAATTCTGAAACCTTTGGTGGTATACTTGGCTCAGTAGGTAAGGGACCTGGTGAAATAACTGGTGGAAAAGGGAATGATGGAGCACTAGCAAATTCGTCCTCTTTGGATCTTCCACAGTCATCTCAATCAAGCACTGGTGTGGATTTAAGCCGCTCTGGTTCTTGTGATCATGCCAAGCAATTGGCATCGGAACTCCCTACTAAAATCTACTCATCTTCAGACGAGGAAAACAGGATTCAGGATCATTTGGCCAGTGATCTACATAGATCCAGTGGTAATAACAAGGAAGAAAATCAGAAACAATCTGAGGATGTTCAACTGTCAAAATCTGAAGCAATTTCTGATGCAGATTTACATGCATCACTCCACTCGAAGAAAGATGGCTCTGATAAAGGGGTATTATCTTCTAATGTCACCCCTTATGCCGCTTCATCTCATGTTCCATCAAAGACTCACGAAAAGACTGGCTCACCTGGGGATTTGACTCAGCGTTCACTTGCTGGAAAAATTAATGGGGAAGCAAAGTTTGTAAGTCCACGTGGGACATCATCTGCTTCAGATTCTGTGGGAGGTGTGGCAGCATCCTCTGGTCTTGGTTTGTCTCCAAGTTCATCTGTTGGTTCATTGTCTTCTGAAAAATCAACTCTTAATCCCAATGCCAAGGAATTCAAGCTCAATCCTAATGCAAAGAGTTTTGTTCCCTCTCAAACACCTGTTCGGCCTCCTACCCCCGTGTCCGACGGTTCCTTTTATTTTCCACCCAATGTATCTACTGTACCAAATATGCCAGGCATGCCCATGAGTATTGGAGTTGGACCTACTTTTACTGGGCCACAACACATGATATATAATCCGCAGGTAGCGCAAATGCCATCTCAACCATATTTTCATCCAAATGGCCCACAGTATGGTCAGCTTATTGGTCATCCTAGGCAGGTTTTATACATGCCGAGTTACCTACCTCCTGAAATGCCATACAAGGGACGGGATTATTGA 1929 0.4261 MNLQQAGQPKSSNGYGRRKSEREGATKSENKIPSGKLNSARLASTGAVTGCKGGGYESPSHDRLVYVTTCLIGHQVEVQVKNGSMYSGIFHATNADNDFGIVLKMARLIKDGSLRGQKSSAEPVSKAPSKILIIPAKELVQVIAKGVAVTRDGLPSELHHDMHQEIMVDSLISHSRHVELGRELKPWVPDEDVPQCPELENTFDGPWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPRTRELEKQALRIAREIEGEETQDLHLAEERGLHFHENFDIDEETRFSSVARGKGVDDSGYDENEDILSDSLNSETFGGILGSVGKGPGEITGGKGNDGALANSSSLDLPQSSQSSTGVDLSRSGSCDHAKQLASELPTKIYSSSDEENRIQDHLASDLHRSSGNNKEENQKQSEDVQLSKSEAISDADLHASLHSKKDGSDKGVLSSNVTPYAASSHVPSKTHEKTGSPGDLTQRSLAGKINGEAKFVSPRGTSSASDSVGGVAASSGLGLSPSSSVGSLSSEKSTLNPNAKEFKLNPNAKSFVPSQTPVRPPTPVSDGSFYFPPNVSTVPNMPGMPMSIGVGPTFTGPQHMIYNPQVAQMPSQPYFHPNGPQYGQLIGHPRQVLYMPSYLPPEMPYKGRDY* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0335 642 Coils Coil 242 262 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 488 547 - -
Amo18g0335 642 SMART LsmAD_2 221 292 IPR009604 -
Amo18g0335 642 MobiDBLite consensus disorder prediction 396 418 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 442 475 - -
Amo18g0335 642 PANTHER ATAXIN 2-RELATED 4 635 IPR045117 GO:0003723
Amo18g0335 642 Gene3D - 68 138 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 337 362 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 1 38 - -
Amo18g0335 642 Pfam Ataxin-2 C-terminal region 523 534 IPR009818 -
Amo18g0335 642 MobiDBLite consensus disorder prediction 323 369 - -
Amo18g0335 642 PANTHER ATAXIN-2 HOMOLOG 4 635 - -
Amo18g0335 642 Pfam LsmAD domain 221 291 IPR009604 -
Amo18g0335 642 Pfam Ataxin 2 SM domain 61 145 IPR025852 -
Amo18g0335 642 MobiDBLite consensus disorder prediction 15 29 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 487 557 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 433 475 - -
Amo18g0335 642 MobiDBLite consensus disorder prediction 396 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0335 Amo-Chr18 4583355 4590081 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0335 - - gmx:100782491 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0335 18 4583355 4590081 Amo18g0335 18 4583355 4590081 ECH
Amo18g0335 18 4583355 4590081 Amo19g1033 19 17897545 17906174 PCT
Amo18g0335 18 4583355 4590081 Amo09g0539 09 7143099 7151855 PCT
Amo19g1033 19 17897545 17906174 Amo18g0335 18 4583355 4590081 PCT
Amo09g0539 09 7143099 7151855 Amo18g0335 18 4583355 4590081 PCT