Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0539 ATGAATTTGCAACAAGTGGGGCAATCTAAATCATCTAATGGATATGGTCGTCGGAAGTATGAAAAAGGAGCAACTAAGTCTGACAGTAAAATCTCATCTGGAAAATCAAATACCAGCAGTGTAGCTGAAGTGACTGGCAGTAAAAGTGGTACTTATGAGAGTCCGTCACATGATCGGCTAGTGTATGTAACATCATCTCTTCTTGGGCATCATGTAGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGAGAAAGATTTTGGAATAATTTTAAAAGTGGCTCGCCTGATAAAGGATAGCTCTTTGCAAGGGCAAAGATCCAGTGTAGAAATTGTCAGCAAGGCTACTWCTAAGACTTTAATTATACCTTCCAAAGAGCTTGTACAAGTCATAGCGAAGGATGTTGCTGTTACTAGGGATGGCCAGCCTAGTGAATCTCATTATGCTATGCATCAGGATATAATGGTTGATTCAGTTATATCTCAATCTCGCCATGTCGAGATGGGGAGAGAATTACAACGATGGGTACCTGATGATGATGATCCACAATGCCCTGAACTGGAAAATATCTTTGATGGCCCTTGGAATAGGGGATGGGATCAGTTTGAAACAAATAAAACGTTGTTTGGTGTAAATAGCACATTCAATGAAGACCTCTACACAACAAAGCTTGAAAAAGGGCCTCAGATGAAAGAGCTGGAACAAAAAGCTTTAAGAATAGCAAAAGAAATTGAAGGGGAGGATACCCATGATCTTCATCTGGCAGAGGAAAGAGGCCGTTATCATGATGATTTTGATAGTGATGAAGAAACCAGATTCTCTTCAGTATATAGGGGAAAAGGTGTTGATGACAGTGGATATGATGAAGATGAGGAACCAAGGTTGGATTCATACAATTCTGAAACATTTGGCAGCATCACAGGTTCGGTCATTAAGAATCCGGGTGAAATAAGTGGTGGAAAAGCCAACAATGGAGCACAAACTTGGTCAAACTTCTCTAAAATGGATCACTCACAGTCATCTCTGTCAAATACTGGTGTGGATTTAGGCCGCTCTGGTGCTGATGATCATGCTAAGCAATTAGCATCTGAACTCTCTACTCAAAATTACTCATTTCAAGATGGAGAATGCAGGATTCAGAATTGTGTTAGTGATCCAAATGAAACCAGTGGTAATGCCACAGAAGAAAATCAGCAAGCTGAGGATGTCCGCCTGTCAAAATCTGAGGATTTACAGCCACCACATAACTTGAAGAATGTCGTCTCTGTCTCTGATAAGGGGGAATCATRYCCTAARACCACCTCCTTTACCCCTTCACCACATATTATATCAAAGGGTCTTGAAAAAACTGGGTTATGTGGGGAGTTTACTACTGGGACTTCAGCATCTGGCAGATCTAGTGAYCAAACAAAAGCTGCAAATTCACGTGGAAGAGTAGGTAGTGCCTCATCATCTGGTTCAGATAATGTGGGCGGTGTGGCCGCATCTTCTGGTTCTGGTCTATCTCCGAGTTCTTCAGTTGGATCATTGTCTTCTGAAAGATCTARTTTGAATCCCCATGCCAAGGAATTCAAGCTTAATCCTAATGCCAAGAGTTTTATTCCGTCCCAAAATCCTGTTAGGCCCCGATCCCCAGTCTCTGATGGTTCCTTCTATTTCCCAGCTAATGTATCTACTGTACCAAATATGCCCGCGATGCCCATGGGTATTGGAGTTGGTAATACTTTTGCTGGGCCACCACAGCCTATGATATATAATCCGCAGGTAGCACAAATGCCATCCCAAGCATATTTTCATCCAAATGGACCACAGTATGGACAGCTTCTTGGTCATCCTAGGCAGGTTTTGTACATGCCAAGCTACCTACCTGAAACGCCGTATAAGGGACGAGATTATTGA 1923 0.4176 MNLQQVGQSKSSNGYGRRKYEKGATKSDSKISSGKSNTSSVAEVTGSKSGTYESPSHDRLVYVTSSLLGHHVEVQVKNGSIYSGIFHATNTEKDFGIILKVARLIKDSSLQGQRSSVEIVSKATXKTLIIPSKELVQVIAKDVAVTRDGQPSESHYAMHQDIMVDSVISQSRHVEMGRELQRWVPDDDDPQCPELENIFDGPWNRGWDQFETNKTLFGVNSTFNEDLYTTKLEKGPQMKELEQKALRIAKEIEGEDTHDLHLAEERGRYHDDFDSDEETRFSSVYRGKGVDDSGYDEDEEPRLDSYNSETFGSITGSVIKNPGEISGGKANNGAQTWSNFSKMDHSQSSLSNTGVDLGRSGADDHAKQLASELSTQNYSFQDGECRIQNCVSDPNETSGNATEENQQAEDVRLSKSEDLQPPHNLKNVVSVSDKGESXPKTTSFTPSPHIISKGLEKTGLCGEFTTGTSASGRSSDQTKAANSRGRVGSASSSGSDNVGGVAASSGSGLSPSSSVGSLSSERSXLNPHAKEFKLNPNAKSFIPSQNPVRPRSPVSDGSFYFPANVSTVPNMPAMPMGIGVGNTFAGPPQPMIYNPQVAQMPSQAYFHPNGPQYGQLLGHPRQVLYMPSYLPETPYKGRDY* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0539 640 MobiDBLite consensus disorder prediction 306 320 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 389 407 - -
Amo09g0539 640 PANTHER ATAXIN-2 HOMOLOG 4 631 - -
Amo09g0539 640 PANTHER ATAXIN 2-RELATED 4 631 IPR045117 GO:0003723
Amo09g0539 640 MobiDBLite consensus disorder prediction 1 52 - -
Amo09g0539 640 Pfam Ataxin 2 SM domain 57 141 IPR025852 -
Amo09g0539 640 SMART LsmAD_2 217 287 IPR009604 -
Amo09g0539 640 MobiDBLite consensus disorder prediction 284 375 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 538 552 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 29 52 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 389 556 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 420 449 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 328 356 - -
Amo09g0539 640 MobiDBLite consensus disorder prediction 462 524 - -
Amo09g0539 640 Pfam LsmAD domain 217 286 IPR009604 -
Amo09g0539 640 MobiDBLite consensus disorder prediction 284 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0539 Amo-Chr9 7143099 7151855 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0539 - - gmx:100782491 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1033 19 17897545 17906174 Amo09g0539 09 7143099 7151855 hybridization
Amo18g0335 18 4583355 4590081 Amo09g0539 09 7143099 7151855 PCT
Amo09g0539 09 7143099 7151855 Amo18g0335 18 4583355 4590081 PCT