Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g0554 ATGACCCTTTTTGGTCAAACGATAACAGGCACAGTTGTGCTTATGCAAAAGAATGTGTTAGACATTAATAGCCTAACTAGTGTTGAAGGGCTTCTTGACACAGGTTTGGGTGGTTTTACTTCAATAGTTGATACTGTTACTTCCTTCTTGGGTCGTTCAGTTGCTTTCCAGTTGATAAGTTCTGACAAAGTTGATTCTAGCGGGAAAGGAAAAGTTGGGAATACAGCTTATTTAAAAGGAGCCATTAACAATTTGCCAACTTTGGGAGACAAACAAAATGCATTCAAAATTGAATTCGATTATGATAGTAACGTTGGGATTCCGGGAGCATTTTACGTAAAGAACTATATGTCAAACGAGTTCTTGCTTGTTAGCTTGACTCTTGACGATATTCCAAATAATGTTGGAACCATCCACTTTGTTTGCAACTCCTGGATTTACAATGCCAAAAACTATCAATCTGATCGCATTTTCTTCGCCAACAATAATTATCTACCAAGCAAGACACCAAGTGCACTAGTGTACTACAGAGAATTGGAATTGAAGAATCTAAGAGGAGATGGAACTGGAGAACGAAAAGAATGGGAAAGAATTTATGATTATGATGTTTACAATGATTTGGGTGATCCAGACAAAGGTGTGGCATATGCTCGTCCAGTTCTTGGAGGATCTTCTACTTATCCTTACCCTAGGAGGGGTAGAACTGGCAGAAAACCAACAAACACAGATCCTAACAGTGAGAGTAGGAGCAGCAGTATATATATCCCAAGAGATGAAACTTTTGGTCACTTGAAATCTTCAGACTTCCTAGCTTATGGAATTAAATCAATATCCCAGGATGTAATCCCTGCTTTGAAATCAGTGTTTGACATAAATTTCACACCAAATGAGTTTGATAGCTTTGAAGATGTGTTTGATCTCTATGAGGGAGGAATTCACTTGCCTACTGATGTGTTTAAGGAAATTACTCCTTTGCCTGTTGTCAATGAACTTCTTAGAACTGACGGTGAAGAATTCCTCAAGTTCCCAGTGCCTAAAGTTGTTCAAGTGAGTAAATCAGCATGGATGACTGATGAAGAATTTGCTAGAGAGATTATTGCTGGACTTAATCCTGGTTTGATTCGTGTTCTGCAAGAGTTTCCACCAAAAAGTAAACTGGATAGTACAGTCTATGGTGATCATACTTGTATAATAACCAAAGAACAGTTAGAGCTTAACTTAGATGGACTCACAACAGATGAGGCTATCCAGGGCAAGAAATTGTTCATCTTGGATCACCATGATTCAATAATTCCATATCTAAGGAGAATAAACTCAACTCCCACAAAGGCCTATGCATCAAGGACCATTCTTTTCTTGAAAAATGATGGAACTTTGAAGCCATTGGCCATTGAGTTAAGTTTGCCACATCCTCAAGGAGATCAATATGGTGTTGTTAGCAATGTCTACTTGCCTGCAATTGAAGGTGTTGAGAGTGCTATTTGGTTACTTGCCAAGGCTTATGTTATTGTAAATGACTCATGCTTTCATCAGCTTGTCAGTCACTGGTTAAACACACATGCAGTAGTTGAACCATTCGTGATTGCAACAAATAGACAGCTAAGTGTGCTTCATCCTATTTATAAGCTTCTACATCCTCATTATCGCGACACCATGAATATAAATTCACTAGCAAGGTCATCCCTGGTCAACGCAGATGGTATTATAGAACAAACATTCTTGTGGGGAAGGTATGCTATGGAAATGTCCTCTGTTATTTACAAGGATTGGGTTTTTACAGACCAAGCATTGCCTGCGGATCTCATCAAAAGAGGAATGGCAGTGGAGGATCCAAGTTCCCCTCATGGTGTCCGTCTAATAGTAGAGGACTACCCTTATGCAGTTGATGGACTAGACATTTGGGACGCCATTAAAACATGGGTCCAAGAATATGTATCAATATACTATCCATCAAATGACACAATTCAGCAAGACTCTGAACTCCAATCTTGGTGGCATGAAATTGTCACTGTTGGCCATGGTGACAAAAAAGATGCTCCTTGGTGGCCAACAATGCAAACTCCTCAAGAACTCATACAAGTCTGCTCTACCCTAATATGGATCGCTTCGGCGCTTCATGCAGCTGTTAATTTCGGACAGTATCCTTACGGCGGTTTCATCTTGAACCGCCCCACCCTCAGTCGGCGGTTCATGCCGGAAAAAGGAACTCCGGAATATGATGAGCTTTCAACGAATGCTCAGAAGGCTTACCTGAGAACAATAACTCCCAAGTTTCAAACTCTGATTGATCTTTCTGTTATTGAAATCTTGTCCAGGCATGCTTCTGATGAGTACTATTTAGGGCAAAGAGATAGTGCTGACTTTTGGACAAATGATACAAAGGCACAAGAAGCATTCAAGAGGTTTGGAACAAATTTGGCTAATGTTGAATTGCAATTGGTTCAGAGGAACAACAATGAGACTTTGAGGAACAGAGTTGGGCCTGTTAGCATGCCTTACACTTTGCTTTATCCTTCAAGTGAAGAAGGCTTGACTTTCAGAGGAATCCCTAATAGTATCTCTATCTAA 2568 0.3999 MTLFGQTITGTVVLMQKNVLDINSLTSVEGLLDTGLGGFTSIVDTVTSFLGRSVAFQLISSDKVDSSGKGKVGNTAYLKGAINNLPTLGDKQNAFKIEFDYDSNVGIPGAFYVKNYMSNEFLLVSLTLDDIPNNVGTIHFVCNSWIYNAKNYQSDRIFFANNNYLPSKTPSALVYYRELELKNLRGDGTGERKEWERIYDYDVYNDLGDPDKGVAYARPVLGGSSTYPYPRRGRTGRKPTNTDPNSESRSSSIYIPRDETFGHLKSSDFLAYGIKSISQDVIPALKSVFDINFTPNEFDSFEDVFDLYEGGIHLPTDVFKEITPLPVVNELLRTDGEEFLKFPVPKVVQVSKSAWMTDEEFAREIIAGLNPGLIRVLQEFPPKSKLDSTVYGDHTCIITKEQLELNLDGLTTDEAIQGKKLFILDHHDSIIPYLRRINSTPTKAYASRTILFLKNDGTLKPLAIELSLPHPQGDQYGVVSNVYLPAIEGVESAIWLLAKAYVIVNDSCFHQLVSHWLNTHAVVEPFVIATNRQLSVLHPIYKLLHPHYRDTMNINSLARSSLVNADGIIEQTFLWGRYAMEMSSVIYKDWVFTDQALPADLIKRGMAVEDPSSPHGVRLIVEDYPYAVDGLDIWDAIKTWVQEYVSIYYPSNDTIQQDSELQSWWHEIVTVGHGDKKDAPWWPTMQTPQELIQVCSTLIWIASALHAAVNFGQYPYGGFILNRPTLSRRFMPEKGTPEYDELSTNAQKAYLRTITPKFQTLIDLSVIEILSRHASDEYYLGQRDSADFWTNDTKAQEAFKRFGTNLANVELQLVQRNNNETLRNRVGPVSMPYTLLYPSSEEGLTFRGIPNSISI* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g0554 855 ProSiteProfiles PLAT domain profile. 37 160 IPR001024 GO:0005515
Amo19g0554 855 PRINTS Plant lipoxygenase signature 130 148 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 156 177 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 195 211 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 228 247 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 295 316 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 340 356 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 379 398 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 445 469 IPR001246 GO:0016491
Amo19g0554 855 PRINTS Plant lipoxygenase signature 767 781 IPR001246 GO:0016491
Amo19g0554 855 CDD PLAT_LH2 7 161 IPR042057 -
Amo19g0554 855 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE-3 5 855 - -
Amo19g0554 855 SUPERFAMILY Lipoxigenase 165 855 IPR036226 -
Amo19g0554 855 Pfam PLAT/LH2 domain 62 159 IPR001024 GO:0005515
Amo19g0554 855 Gene3D - 165 264 - -
Amo19g0554 855 Gene3D - 488 854 - -
Amo19g0554 855 ProSitePatterns Lipoxygenases iron-binding region signature 1. 510 524 IPR020833 GO:0016702|GO:0046872
Amo19g0554 855 Gene3D PLAT/LH2 domain 2 164 - -
Amo19g0554 855 Pfam Lipoxygenase 173 838 IPR013819 GO:0016702|GO:0046872
Amo19g0554 855 ProSitePatterns Lipoxygenases iron-binding region signature 2. 537 547 IPR020834 GO:0016702|GO:0046872
Amo19g0554 855 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 6 164 IPR036392 GO:0005515
Amo19g0554 855 MobiDBLite consensus disorder prediction 225 252 - -
Amo19g0554 855 SMART LH2_4 6 161 IPR001024 GO:0005515
Amo19g0554 855 PRINTS Lipoxygenase signature 492 509 IPR013819 GO:0016702|GO:0046872
Amo19g0554 855 PRINTS Lipoxygenase signature 510 527 IPR013819 GO:0016702|GO:0046872
Amo19g0554 855 PRINTS Lipoxygenase signature 530 550 IPR013819 GO:0016702|GO:0046872
Amo19g0554 855 PANTHER LIPOXYGENASE 5 855 IPR000907 GO:0016702|GO:0046872
Amo19g0554 855 Gene3D - 265 353 IPR027433 -
Amo19g0554 855 Gene3D - 354 487 - -
Amo19g0554 855 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 163 855 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g0554 Amo-Chr19 8364414 8371807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g0554 6 855 Acyl Lipid Metabolism Gene Families AT1G55020 58.005 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g0554 K15718 - gmx:547869 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0554 19 8364414 8371807 Amo09g0558 09 7513721 7520658 hybridization
Amo19g0554 19 8364414 8371807 Amo19g1049 19 18364984 18372939 PCT
Amo19g0554 19 8364414 8371807 Amo09g0559 09 7523931 7531320 PCT
Amo19g1049 19 18364984 18372939 Amo19g0554 19 8364414 8371807 PCT
Amo09g0559 09 7523931 7531320 Amo19g0554 19 8364414 8371807 PCT