Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo09g0558 ATGTTTTCGATTCCAGGAACTGGTATATTCAACAATAACCAGAAGATCAAGGGTACCGTTGTGCTTATGGGCAAGAATGTTTTGGACTTTAATGCCATAACATCCGCCGGAAGCAGTGTTTCCGGCGCCGTCAGCGGAATCTTTGGCACTGTTAGTGATGTGGCTGGCTCGGTTGTCGATGGCGCCACCTCCATCTTCAGCCGTAGCATCGCCCTCAAGTTGATCAGTGCTACCAAGACTGATGGGCAAGGAAATGGGAAAGTTGGAAAGGAAACTTATTTGGAGAAACATCTTCCAACGTTGCCAAATTTGGGAGCCAAGCAAGATGCATTCGATATCCATTTTGACTATGATGCTGATTTCGGGATTCCGGCTGCATTCTACATCAAGAACTATATGCAAGTTGAGTTCTTCCTTGTTAGTGTGACTCTTGAAGACATCCCAAACCATGGAACCGTTACCTTTGTTTGCAACTCATGGGTCTACAACTTCAAAAATTACAAAAAGGACCGCATCTTCTTTGCTAATGATGTTTATCTTCCAAGTGCAACCCCGGGTGCACTAGTGAAGTACAGAAATGAAGAACTGGAAAATTTAAGAGGAGATGGAACAGGAGAACGCAAGGAAGCAGATAGAATCTATGATTATGATGTCTACAATGATTTGGGTAACCCTGATGTGGATAACAGCCTTGCTCGCCCCGTTCTTGGAGGATCTTCCGAATATCCTTACCCTCGCAGGGGTAGAACTGGCAGACGCAAGACTAAAAAGGATCCCAAGAGTGAGGCACCAAGCTCAAGTACTTATGTTCCAAGAGATGAAATCTTTGGTCACTTGAAGTCATCGGATTTCCTTACATATGGAATCAAATCTTTGGCTCAAAATGTTTTGCCAAGGCTCCAATCAGTGTTTGGTTTAAACAGTGAGTTTGATAGCTTCGACGATGCTCGTGCATTCTTTGAGGGTGGAATTTACCTCCCTACTGATATCATCAGCGATATCAGCCCCTTGCCAGTTCTTAAGGAAATCTTCCGTACAGATGGTGAACAAGCTCTCAAGTTCCCTCCACCTCATGTCATCCAAGTTAGTAAGTCTGCATGGATGACTGACGAAGAATTTGCCAGAGAGATTATTGCTGGAGTAAATCCCAATGTTATTAAACGCCTTGAGGTGTTTCCACCACAAAGCACACTGGATCCCTCAATTTATGGTGATCAGACGAGTACAATTACAAAAGAAAGCCTGGAGACTAACCTAGAAGGACTTACTGTTGATGAGGCGCTTGAAGGGAACAAATTATTCATCTTAGATTACCATGATGCATTCATGCCATACTTGAGGAAGATAAACGGGCTTAAGACTTCAAAGGCTTATGCAACAAGGACAATCCTGTTCTTGAAAAATGATGGAACATTGACACCATTGGCCATTGAATTAAGTGTGCCACACCCTGGCGGAGACACATTTGGTGCTGTTAGCAGAGTTGTCTTGCCTGCTAAAGAAGGCGCTGAAGGTACTATTTGGCTTCTTGCCAAGGCTTATGTCGTCGTCAATGACTCATGTTATCATCAACTCATGAGCCACTGGTTGAATACTCATGCTGCAATGGAGCCATTTATCATTGCAACATACAGGCATCTTAGTGTGCTCCATCCTATCCACAAGCTTCTAGAACCTCACTACCGCGACACCATGAATATCAATGGACTTGCAAGACAATCTCTGATTAATGCAGGTGGTATCATTGAGCAATCATTCTTGCCTGGACCATTTTCTGTGGAGATGTCTTCTAAAGTTTACAAGAATTGGGTTTTCCCTGACCAAGCTTTGCCTGCTGATCTTATTAAGAGGGGATTGGCAGTTGAGGATCCATCGGCTCCCCATGGCGTTCGCCTCGTGATCGAGGACTACCCTTATGCAGTGGATGGACTGGAGATATGGGATGCTATCAAGACATGGGTCCAAGACTATGTCTCCTTGTACTACGCTTCAGATAATGAAGTCACAAAAGACACTGAACTCCAAACATGGTGGAAGGAAGCTGTAGAGAAGGGTCATGAAGACCTGAAAGACAAGCCGTGGTGGCCAAAACTGCAAACTCTTGAAGACTTGGTTCAGTCATGCAGCATTATTATATGGATCGGTTCGGCCCTTCACGCAGCTGTTAACTTCGGCCAATATCCTTATGGCGGCTTCATCCTGAACCGGCCAACAATTAGCAGAAAATTCTTACCGGAACTCGAAAGCGAGGAGTATCAAGAATTGGTTACAAACCCTCAGAAAGCTTACTTGAGAACAATTACAGGGAAATATGAGGCCCTGGTGGACATTTCGGTTATTGAGATATTGTCAAGGCATGCTTCTGATGAGGTGTATCTTGGGCAGAGAGACAATCCAAACTGGACATCGGATTCGAAGGCGATACAAGCCTTCAAGAAATTTGGAAACAAGTTGGCAGAGATCGAGGCCAAGATCGAGCAGAGGAACAAAGAACCAAGCTTTAGAAACAGAATTGGACCTGCTCATATGCCTTACAGTCTTCTCCTTCCTACCAGTGATGAAGGCCTTACTTTCAGAGGAATTCCCAACAGTATCTCTATCTAA 2604 0.4435 MFSIPGTGIFNNNQKIKGTVVLMGKNVLDFNAITSAGSSVSGAVSGIFGTVSDVAGSVVDGATSIFSRSIALKLISATKTDGQGNGKVGKETYLEKHLPTLPNLGAKQDAFDIHFDYDADFGIPAAFYIKNYMQVEFFLVSVTLEDIPNHGTVTFVCNSWVYNFKNYKKDRIFFANDVYLPSATPGALVKYRNEELENLRGDGTGERKEADRIYDYDVYNDLGNPDVDNSLARPVLGGSSEYPYPRRGRTGRRKTKKDPKSEAPSSSTYVPRDEIFGHLKSSDFLTYGIKSLAQNVLPRLQSVFGLNSEFDSFDDARAFFEGGIYLPTDIISDISPLPVLKEIFRTDGEQALKFPPPHVIQVSKSAWMTDEEFAREIIAGVNPNVIKRLEVFPPQSTLDPSIYGDQTSTITKESLETNLEGLTVDEALEGNKLFILDYHDAFMPYLRKINGLKTSKAYATRTILFLKNDGTLTPLAIELSVPHPGGDTFGAVSRVVLPAKEGAEGTIWLLAKAYVVVNDSCYHQLMSHWLNTHAAMEPFIIATYRHLSVLHPIHKLLEPHYRDTMNINGLARQSLINAGGIIEQSFLPGPFSVEMSSKVYKNWVFPDQALPADLIKRGLAVEDPSAPHGVRLVIEDYPYAVDGLEIWDAIKTWVQDYVSLYYASDNEVTKDTELQTWWKEAVEKGHEDLKDKPWWPKLQTLEDLVQSCSIIIWIGSALHAAVNFGQYPYGGFILNRPTISRKFLPELESEEYQELVTNPQKAYLRTITGKYEALVDISVIEILSRHASDEVYLGQRDNPNWTSDSKAIQAFKKFGNKLAEIEAKIEQRNKEPSFRNRIGPAHMPYSLLLPTSDEGLTFRGIPNSISI* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo09g0558 867 Gene3D - 501 866 - -
Amo09g0558 867 Gene3D - 366 500 - -
Amo09g0558 867 Pfam PLAT/LH2 domain 83 174 IPR001024 GO:0005515
Amo09g0558 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 867 IPR013819 GO:0016702|GO:0046872
Amo09g0558 867 SUPERFAMILY Lipoxigenase 180 867 IPR036226 -
Amo09g0558 867 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Amo09g0558 867 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Amo09g0558 867 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Amo09g0558 867 SMART LH2_4 14 176 IPR001024 GO:0005515
Amo09g0558 867 MobiDBLite consensus disorder prediction 229 269 - -
Amo09g0558 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Amo09g0558 867 PANTHER LIPOXYGENASE 8 867 - -
Amo09g0558 867 Pfam Lipoxygenase 188 850 IPR013819 GO:0016702|GO:0046872
Amo09g0558 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 179 IPR036392 GO:0005515
Amo09g0558 867 Coils Coil 811 831 - -
Amo09g0558 867 Gene3D PLAT/LH2 domain 6 179 - -
Amo09g0558 867 CDD PLAT_LH2 15 176 IPR042057 -
Amo09g0558 867 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 243 262 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 145 163 IPR001246 GO:0016491
Amo09g0558 867 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Amo09g0558 867 Gene3D - 180 279 - -
Amo09g0558 867 PANTHER LIPOXYGENASE 8 867 IPR000907 GO:0016702|GO:0046872
Amo09g0558 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
Amo09g0558 867 Gene3D - 280 365 IPR027433 -
Amo09g0558 867 ProSiteProfiles PLAT domain profile. 47 175 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo09g0558 Amo-Chr9 7513721 7520658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo09g0558 4 867 Acyl Lipid Metabolism Gene Families AT1G55020 56.328 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo09g0558 K15718 - gmx:100127399 1377.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g0554 19 8364414 8371807 Amo09g0558 09 7513721 7520658 hybridization