Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g1049 ATGTCGTTTCTCTTCAACAAGGGTCAAAAGATCAAGGGGACTGTGGTGTTGATGCCCAAGAATGTCTTGGACTTCAACACCATATCCTCCATCCCCAACGGCGGCGTTGCCGGGGCATTCGACGGCCTCCTCGGCACTGCCACTGACTTACTTGGCCATGCAGTTGATGATCTCACTGCCATCTTTAGCCGCCAAATTTCGCTTAAGTTGATCAGTGCTACCAAGACTGATGCAAACGGAAATGGGAAAATTGGAAAGGAAACTTATGTAGAGAATCATCTTCCAACCTTACCCACATTGGGAGCAAGGCAAGAAGCATTTGATATTCATTTTGATTATGATGCCGAGTTTGGAATTCCAGCAGCATTTTATCTCAGAAGCTACATGCAAACTGAGTTCTTCCTCGTTAGTGTTACTCTTGAAGACGTTCCAAACCATGGAACTATTCACTTTGTTTGCAACTCATGGGTCTACAACTTCAAAAATTACAAAAAGGACCGCATCTTCTTTATCAACAACGTGTTTTTACCTAGTGAAACACCTGCTTCACTATTGAAGTACAGAAAAGAAGAGTTGCAGAACTTAAGAGGAGATGGAACAGGGGAGCGCAAAGAATACGATAGGATTTACGATTATGATGTCTACAATGATTTAGGTAATCCAGATCGTGGTGAAAAGTATTCTCGCCCAATCCTTGGAGGCTCTTCCACTCATCCCTACCCTCGAAGAGTTAGAACTGGTAGAAAACCAACCAAAAAAGATCCTAAAAGTGAGACTCCACCAACGGAGACTTATGTTCCAAGAGACGAAAATTTTGGTCACTTGAAATCATCTGACTTCCTCATATACGGAATCAAATCTTTGTCTCAAAACGTGTTGCCTCTTTTCGAATCGTTGATCTTCGATTTAGACTTCACACCGAATGAGTTTGATAGCTTCGACGAAGTACGAGAACTCTACGAAGGAGGAGTCAAACTGCCCACAGATATGCTGAGTAAAATTAGTCCCTTGCCGGCGCTCAAAGAAATATTTCGGACTGATGGCGAACAAACACTCAAATTCCCACCACCTCATGTAATCAGAGTTAGCAAATCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCTGGTGTAAATCCTTGTGTGATTCGACGTCTTCAAGAGTTCCCACCCCAAAGCACACTAGATGCTACCATCTACGGTGACCAAAACAGTAAAGTTTCAAAACAAGAGATGGAGACTAACCTAGATGGGCTCACAGTGGAACAGGCACTTAATGGTAATAGATTATTCATATTGGATTACCATGATGCCTTCATGCCATATCTAGAAAGGATCAACAAAATTGCAAAGGCTTATGCTACTAGAACATTCCTTTTCTTGAGTGACAATGCGAAATTGAAGCCAGTTGCCATTGAGTTAAGTTTGCCACATCCTAGTGGAGATCAATATGGTGCTGTTAGTAAAGTCATCTTGCCTGCTTCTGAAGGTGTTGAAAGCACAATTTGGCTATTGGCCAAGGCTCATGTAATTGTCAACGACTCGTGTTATCATCAACTCATGAGCCACTGGTTAAACACACACGCAGTTATTGAGCCATTTGCCATAGCAACAAATAGGAATCTTAGTGTGCTTCACCCCATTAGTAAACTCCTACACCCTCATTATCGTGACACCATCAACATCAATGGACTTGCTCGTCAAGCACTAATCAATGCAGGTGGCATCATAGAGCAATCATTTTTGCCTGGCCCCAATTCCATAGAGATGTCTTCAGCTGTTTACAAGAATTGGGTATTCACAGACCAAGCTTTACCAGCTGATCTTGTTAAGAGGGGATTGGCAATTCAAGATCCTTCTTCACCTTATGGCCTTAACCTAGTGATAAAGGATTACCCTTATGCAGTTGATGGACTAGAGATATGGGATGCAATTAAGACATGGGTCCAAGACTATGTTTCCTTGTACTACCCTTCAGATGAAGCAGTTAAGAAAGATTCAGAACTGCAGGCATGGTGGAAGGAAGCTGTAGAGAGGGGTCATGAAGACTTAAAAGACAAGCCATGGTGGCCAAAAATGCAAAGCATTCAAGAATTGATTCAATGCTGCTCTATCATTATATGGACWGCTTCGGCGCTTCATGCWGCCGTTAAYTTYGGACAGTATCCATATGGAGGTTACATCCTTAACCGTCCAACTCTAAGTAGAAGATKGATCCCRGAGAAGGGAACTAAAGAYTATGATGAGATGGTGAARAATCCTCAAAAGGCTTATTTGGGAACAATCACACCTAAGTATCAGACCCTTGTTGATCTCTCAGTGATTGAGATTTTGTCAAGGCATGCCTCTGATGAAGTGTACCTTGGGCAGAGGGATAATCCTAACTGGACAAGTGATTCAAGGGCAATACAAGCTTTCAACAAGTTTGGGAGCAAGTTGGCAGAGATTGAGGGTAAGATTCAAGAAAGGAACAAGGATTCCAGTTTGAGCAATAGGTTTGGACCTGTTGAAGTTCCCTATACTTTGCTTGTTCCTTCTAGCACTGAAGGCTTAACTTTCAGAGGTATCCCTAACAGTATCTCCATCTGA 2598 0.423 MSFLFNKGQKIKGTVVLMPKNVLDFNTISSIPNGGVAGAFDGLLGTATDLLGHAVDDLTAIFSRQISLKLISATKTDANGNGKIGKETYVENHLPTLPTLGARQEAFDIHFDYDAEFGIPAAFYLRSYMQTEFFLVSVTLEDVPNHGTIHFVCNSWVYNFKNYKKDRIFFINNVFLPSETPASLLKYRKEELQNLRGDGTGERKEYDRIYDYDVYNDLGNPDRGEKYSRPILGGSSTHPYPRRVRTGRKPTKKDPKSETPPTETYVPRDENFGHLKSSDFLIYGIKSLSQNVLPLFESLIFDLDFTPNEFDSFDEVRELYEGGVKLPTDMLSKISPLPALKEIFRTDGEQTLKFPPPHVIRVSKSAWMTDEEFAREMLAGVNPCVIRRLQEFPPQSTLDATIYGDQNSKVSKQEMETNLDGLTVEQALNGNRLFILDYHDAFMPYLERINKIAKAYATRTFLFLSDNAKLKPVAIELSLPHPSGDQYGAVSKVILPASEGVESTIWLLAKAHVIVNDSCYHQLMSHWLNTHAVIEPFAIATNRNLSVLHPISKLLHPHYRDTININGLARQALINAGGIIEQSFLPGPNSIEMSSAVYKNWVFTDQALPADLVKRGLAIQDPSSPYGLNLVIKDYPYAVDGLEIWDAIKTWVQDYVSLYYPSDEAVKKDSELQAWWKEAVERGHEDLKDKPWWPKMQSIQELIQCCSIIIWTASALHAAVNFGQYPYGGYILNRPTLSRRXIPEKGTKDYDEMVKNPQKAYLGTITPKYQTLVDLSVIEILSRHASDEVYLGQRDNPNWTSDSRAIQAFNKFGSKLAEIEGKIQERNKDSSLSNRFGPVEVPYTLLVPSSTEGLTFRGIPNSISI* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g1049 865 ProSitePatterns Lipoxygenases iron-binding region signature 1. 521 535 IPR020833 GO:0016702|GO:0046872
Amo19g1049 865 Pfam PLAT/LH2 domain 74 170 IPR001024 GO:0005515
Amo19g1049 865 MobiDBLite consensus disorder prediction 221 269 - -
Amo19g1049 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 548 558 IPR020834 GO:0016702|GO:0046872
Amo19g1049 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 865 IPR013819 GO:0016702|GO:0046872
Amo19g1049 865 Pfam Lipoxygenase 184 848 IPR013819 GO:0016702|GO:0046872
Amo19g1049 865 PANTHER SEED LINOLEATE 9S-LIPOXYGENASE 2 865 - -
Amo19g1049 865 PRINTS Lipoxygenase signature 541 561 IPR013819 GO:0016702|GO:0046872
Amo19g1049 865 PRINTS Lipoxygenase signature 503 520 IPR013819 GO:0016702|GO:0046872
Amo19g1049 865 PRINTS Lipoxygenase signature 521 538 IPR013819 GO:0016702|GO:0046872
Amo19g1049 865 Gene3D PLAT/LH2 domain 1 175 - -
Amo19g1049 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 174 IPR036392 GO:0005515
Amo19g1049 865 SMART LH2_4 9 172 IPR001024 GO:0005515
Amo19g1049 865 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 778 792 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Amo19g1049 865 PRINTS Plant lipoxygenase signature 456 480 IPR001246 GO:0016491
Amo19g1049 865 SUPERFAMILY Lipoxigenase 176 865 IPR036226 -
Amo19g1049 865 CDD PLAT_LH2 10 172 IPR042057 -
Amo19g1049 865 Gene3D - 276 364 IPR027433 -
Amo19g1049 865 Gene3D - 176 275 - -
Amo19g1049 865 PANTHER LIPOXYGENASE 2 865 IPR000907 GO:0016702|GO:0046872
Amo19g1049 865 Gene3D - 499 864 - -
Amo19g1049 865 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
Amo19g1049 865 Gene3D - 365 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g1049 Amo-Chr19 18364984 18372939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g1049 9 865 Acyl Lipid Metabolism Gene Families AT1G55020 56.782 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g1049 K15718 - gmx:100781402 1369.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g1049 19 18364984 18372939 Amo09g0559 09 7523931 7531320 hybridization
Amo19g0554 19 8364414 8371807 Amo19g1049 19 18364984 18372939 PCT
Amo19g1049 19 18364984 18372939 Amo19g0554 19 8364414 8371807 PCT