Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g3457 ATGGCTTCAAACAAAGTCATTGCCACCATTTTGGTGCTCTCTCTCTTAGCCTACTCAACACTCACTCATGCCAATTGCCCACCAAAAAAAGCAACTCCACCACCTTCACCGCCGGTGACGCCGCCACCGTCACCAAAACCAACACCACCAACTCCGACTCCGTCTCCGAAAGTAACACCTCCAACTCCTACTCCGACACCACCAACTCCGACTCCGTCGCCGAAAGTAACACCTCCAACTCCTTCTACTCCATGTCCACCAACTCCAACTCCATCTCCACCATCCCAAGAAAAATGCCCTAAAGATACCCTAAAGTTAGGGGCTTGTGCTGACCTTTTAGGGCTTGTTAACATCATTATTGGGACTCCACCATCAAGCCAGTGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAAGCAGCACTTTGCCTTTGCACTGCAATTAAGGCCAATGTGCTTGGAATCAACTTGAATGTGCCTATCACACTTGAATTGATCCTTAGTGCATGCCAAAAAACTGTCCCTCCTGGCTTCCAATGTCCTTAA 546 0.4835 MASNKVIATILVLSLLAYSTLTHANCPPKKATPPPSPPVTPPPSPKPTPPTPTPSPKVTPPTPTPTPPTPTPSPKVTPPTPSTPCPPTPTPSPPSQEKCPKDTLKLGACADLLGLVNIIIGTPPSSQCCALIKGLADLEAALCLCTAIKANVLGINLNVPITLELILSACQKTVPPGFQCP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g3457 181 SMART aai_6 99 180 IPR016140 -
Amo18g3457 181 MobiDBLite consensus disorder prediction 24 99 - -
Amo18g3457 181 PANTHER - 71 181 - -
Amo18g3457 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 102 181 IPR036312 -
Amo18g3457 181 PRINTS Proline rich extensin signature 26 38 - -
Amo18g3457 181 PRINTS Proline rich extensin signature 38 59 - -
Amo18g3457 181 PRINTS Proline rich extensin signature 61 77 - -
Amo18g3457 181 CDD HPS_like 98 180 IPR027923 -
Amo18g3457 181 Pfam Hydrophobic seed protein 99 181 IPR027923 -
Amo18g3457 181 MobiDBLite consensus disorder prediction 28 96 - -
Amo18g3457 181 Gene3D - 94 181 IPR036312 -
Amo18g3457 181 PANTHER LIPID TRANSFER PROTEIN 71 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g3457 Amo-Chr18 137644520 137645065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g3457 87 181 Acyl Lipid Metabolism Gene Families AT4G22490 39.175 9.65e-17 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g3457 - - gmx:100526941 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g3457 18 137644520 137645065 Amo18g3457 18 137644520 137645065 ECH
Amo08g2135 08 34207695 34208225 Amo18g3457 18 137644520 137645065 hybridization
Amo16g3655 16 147336974 147337570 Amo18g3457 18 137644520 137645065 PCT
Amo18g3457 18 137644520 137645065 Amo16g3655 16 147336974 147337570 PCT