Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3655 ATGGCTTTGAACACTACCAAGCTTTTTGCCACAATTCTTGTTGTGTCACTCCTTTCAACACCTTTATTAACCAATGCATGTGGATCATGCAAGGCACCAACTCCGCCACCACCAAAAGCAAAATGCCCCAAAGACACATTGAAATTAGGTGTTTGTGCTGATGTCTTAGGACTTGTTAACGTTATTGTTGGTTCCCCAGCTTCAAGCAAGTGTTGTGCATTGCTTCAAGGCTTGGTTGATTTGGAAGCAGCACTTTGTTTGTGCACCGCTATTAAGGCCAATGTTCTTGGCATCAACTTAGATATCCCTCTCACTCTCAGCTTGCTCCTCAGTGCTTGTCAAAAATCACTTCCTTCTGGCTTCCAATGTTGA 372 0.4355 MALNTTKLFATILVVSLLSTPLLTNACGSCKAPTPPPPKAKCPKDTLKLGVCADVLGLVNVIVGSPASSKCCALLQGLVDLEAALCLCTAIKANVLGINLDIPLTLSLLLSACQKSLPSGFQC* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3655 123 PANTHER - 25 123 - -
Amo16g3655 123 CDD HPS_like 45 123 IPR027923 -
Amo16g3655 123 Gene3D - 42 123 IPR036312 -
Amo16g3655 123 SMART aai_6 42 123 IPR016140 -
Amo16g3655 123 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 45 123 IPR036312 -
Amo16g3655 123 PANTHER LIPID TRANSFER PROTEIN 25 123 - -
Amo16g3655 123 Pfam Hydrophobic seed protein 42 123 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3655 Amo-Chr16 147336974 147337570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3655 16 123 Acyl Lipid Metabolism Gene Families AT4G22490 37.963 8.82e-19 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3655 - - gmx:100306307 160.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3655 16 147336974 147337570 Amo16g3655 16 147336974 147337570 ECH
Amo16g3655 16 147336974 147337570 Amo08g2135 08 34207695 34208225 PCT
Amo16g3655 16 147336974 147337570 Amo18g3457 18 137644520 137645065 PCT
Amo08g2135 08 34207695 34208225 Amo16g3655 16 147336974 147337570 PCT
Amo18g3457 18 137644520 137645065 Amo16g3655 16 147336974 147337570 PCT