Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2135 ATGCAAACCCATCTATCTCACTCAACAATTCTTATTCAAAACAAAACAAAAAACAATAACATTATTATTATTATTATTATTGCTATGGCTTCAAACAAAGTTATTGCCACCATTTTGGTGCTCTCTCTCTTAGCCTACTCAACACTCACTCATGCCAATTGCCCACCAAAAAAAGCAACTCCACCACCTTCGCCGCCGGTGACGCCGCCACCGTCACCAAAACCAACACCACCAACTCCGACTCCGTCACCAAAACCAACACCCCCAACTCCTACCACTCCATGTCCACCAACTCCAACTCCACCTCCACCATCCCAAGAAAAATGCCCTAAAGATACCCTAAAGTTAGGTGCTTGTGCTGACCTTTTAGGGCTTGTTAACATCATTATTGGGACTCCACCATCAAGCAAGTGTTGTGCATTGATTAAGGGTTTGGCTGATTTGGAAGCAGCACTTTGCCTTTGCACTGCAATTAAGGCCAATGTGCTTGGAATCAACTTGAATGTGCCTATCACACTTGAATTGATCCTT 531 0.4369 MQTHLSHSTILIQNKTKNNNIIIIIIIAMASNKVIATILVLSLLAYSTLTHANCPPKKATPPPSPPVTPPPSPKPTPPTPTPSPKPTPPTPTTPCPPTPTPPPPSQEKCPKDTLKLGACADLLGLVNIIIGTPPSSKCCALIKGLADLEAALCLCTAIKANVLGINLNVPITLELIL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2135 177 MobiDBLite consensus disorder prediction 56 109 - -
Amo08g2135 177 CDD HPS_like 108 177 IPR027923 -
Amo08g2135 177 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 112 177 IPR036312 -
Amo08g2135 177 PANTHER LIPID TRANSFER PROTEIN 29 60 - -
Amo08g2135 177 PANTHER LIPID TRANSFER PROTEIN 81 177 - -
Amo08g2135 177 Pfam Hydrophobic seed protein 109 176 IPR027923 -
Amo08g2135 177 PRINTS Proline rich extensin signature 54 66 - -
Amo08g2135 177 PRINTS Proline rich extensin signature 66 87 - -
Amo08g2135 177 PRINTS Proline rich extensin signature 97 113 - -
Amo08g2135 177 MobiDBLite consensus disorder prediction 56 108 - -
Amo08g2135 177 PANTHER - 81 177 - -
Amo08g2135 177 Gene3D - 105 177 IPR036312 -
Amo08g2135 177 PANTHER - 29 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2135 Amo-Chr8 34207695 34208225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2135 97 159 Acyl Lipid Metabolism Gene Families AT4G22490 39.683 4.24e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2135 - - gmx:547594 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g2135 08 34207695 34208225 Amo18g3457 18 137644520 137645065 hybridization
Amo16g3655 16 147336974 147337570 Amo08g2135 08 34207695 34208225 PCT
Amo08g2135 08 34207695 34208225 Amo16g3655 16 147336974 147337570 PCT