Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g1281 ATGCCAACGACACCGTTCTCGGACTCCGACGAGCTCCGTATGCCGCTGGTGGCGGTGGCAGCAAAGGAGGCGGAGACGGAGAAGCTTTGCATCGACGAGATGCTTCGAAAGTATTGCGGCGAGTTCGGAAAGTGGCAGTTGAGACACTTCATCTTCACAAGCCTCGCGTGGGCGCTGGAGGCCTTCCACACCATGGTCATGATCTTCGCCGACCGTGAGCCGGAGTGGCGATGTACCGCCACCACCTCCGCTGCCTGCGGAGTGGTTGGGAGCACCTGCGAAATCCGGCCGGATGACTGGGAGTGGATTGGTGGACGCGGCGGCGCCACCGTGTCAGAGTGGGGACTTGTTTGCGGCGACAAATTTAAAGTTGGGCTCGTCCAGTCCTTATTCTTTGCCGGATGTATGATTGGTGCTGGAATATTTGGTCACCTCTCAGATTCTTTTCTTGGAAGAAAAGGTTCACTGATGGTTGTTTGTGCCTTAAATGCCATTTTTGGTTGTCTCACAGCATTCTCGCCAAATTATTGGATCTACGTCATTTTCCGCCTCCTCACCGGCTTCAGCACCGGCGGTGTTGGCCTATGCGCATTTGTCCTTGCCACCGAGCCAATTGGCCCAACAAAACGTGGTATCGCCGGAATGTCCACTTTCTACTTTTTCTCCATCGGCATTGCAATCCTCTCCGCCGTTGCCTACATCTTCCAAACATGGCGTGCGCTTTACATTGCGTCCTCCATCCCCTCCATTCTCTTCGTCTTCCTCGTCATCCCTTTTCTCTCAGAGTCTCCAAGATGGTACCTCGTTCGTGGAAGAGTAACCGAAGCCATGAAGATCATGTCCAATATTGCTTCTACCAATGGAAAGCACCTCCCTAGTGGTGTTCTTCTTGCACTTGACGAAGAAACCGAAGTACAAGCAGAAGCAAAAACGGAAGCACTAACCTTGACCTATAAGAACAACAACAACAAGTCTTTGGAAAACAAAGATGCAGTTGGTGGTTCTATTGTTGACGTCCTTCGCTCTCCAGTCACTAGAATAAGGTTGATTCTAATGGTGGCAATCAACTTCTTTTGCTCTGTTGTGTACTATGGTCTGAGCTTGAACGTGGTAAATCTTGATACCAACCTTTACATGAACGTGGCGTTGAATGCAGTGGCAGAGATGCCGGCGTTTGGGATAACGGCGATTTTGTTGGACAAGTTTGGGAGGAAGCCGTTGGCAATAGGGACAATGTGGTTCAGCGGTTTGTTTTGTTTGTTAGGTAGTTTAATGGGTAATGTTGGAGTGTGGAAGTTAATTAGAATGGTGTGTGGTATTTTGGGGATATTTGGGATGGCCGGAACTTATAATTTATTGTTTATTTACACGGCGGAGTTGTTCCCTACGGTGGTCAGGAACGCAGCACTTGGGTGCGCCACGCAGGCGGTGCAAATGGGGGCAATATTGTCGCCGGTGGTGGTGGTTTTGGGCGGTTGGCTGCCGTTCGCGGTGTTTGCTGTGTGTGGAATAGTGGGTGGCATGTTTGCATTTTATTTGCCGGAAACTTTGAATCAGCCCTTATATGATACATTCTCTGGATTGGAAGCTGGGCTTGTTTGA 1602 0.5012 MPTTPFSDSDELRMPLVAVAAKEAETEKLCIDEMLRKYCGEFGKWQLRHFIFTSLAWALEAFHTMVMIFADREPEWRCTATTSAACGVVGSTCEIRPDDWEWIGGRGGATVSEWGLVCGDKFKVGLVQSLFFAGCMIGAGIFGHLSDSFLGRKGSLMVVCALNAIFGCLTAFSPNYWIYVIFRLLTGFSTGGVGLCAFVLATEPIGPTKRGIAGMSTFYFFSIGIAILSAVAYIFQTWRALYIASSIPSILFVFLVIPFLSESPRWYLVRGRVTEAMKIMSNIASTNGKHLPSGVLLALDEETEVQAEAKTEALTLTYKNNNNKSLENKDAVGGSIVDVLRSPVTRIRLILMVAINFFCSVVYYGLSLNVVNLDTNLYMNVALNAVAEMPAFGITAILLDKFGRKPLAIGTMWFSGLFCLLGSLMGNVGVWKLIRMVCGILGIFGMAGTYNLLFIYTAELFPTVVRNAALGCATQAVQMGAILSPVVVVLGGWLPFAVFAVCGIVGGMFAFYLPETLNQPLYDTFSGLEAGLV* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g1281 533 Gene3D MFS general substrate transporter like domains 47 525 IPR036259 -
Amo18g1281 533 ProSiteProfiles Major facilitator superfamily (MFS) profile. 49 518 IPR020846 GO:0022857
Amo18g1281 533 ProSitePatterns Sugar transport proteins signature 1. 395 411 IPR005829 GO:0016021|GO:0022857|GO:0055085
Amo18g1281 533 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 31 530 - -
Amo18g1281 533 ProSitePatterns Sugar transport proteins signature 2. 185 210 IPR005829 GO:0016021|GO:0022857|GO:0055085
Amo18g1281 533 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 31 530 - -
Amo18g1281 533 SUPERFAMILY MFS general substrate transporter 120 521 IPR036259 -
Amo18g1281 533 Pfam Sugar (and other) transporter 120 522 IPR005828 GO:0016021|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g1281 Amo-Chr18 22826246 22831035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g1281 1 529 Organic Solute Cotransporters AT3G20660 67.105 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g1281 K08202 - gmx:100797665 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g1281 18 22826246 22831035 Amo18g1281 18 22826246 22831035 ECH
Amo18g1281 18 22826246 22831035 Amo08g1434 08 23338992 23343646 hybridization
Amo18g1281 18 22826246 22831035 Amo03g0304 03 5755475 5759267 PCT
Amo03g0304 03 5755475 5759267 Amo18g1281 18 22826246 22831035 PCT