Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo18g0203 ATGGAGTTGTTTTCCTCTTCCCTCACTGCTACTACTATACTACTCTATGTAGTAACGCCATTATTGTACTTGTGCTTCCTTGTGTGGAAGGTGGTGAATCACAAAAGGGACCATGAATGCTACATTTTAGGGTACCAATGCTACAAGCCAGGCGATGATAGAAAGCTTGGAACTCAATGCAGCGGCAGCATCATATCCAGGAACAAAACCTTGGCTCTCAACGACTTCAAGTTCCTTCTCAAAGCCATTGTCAGATCCGGCCTTGGCGAAGAAACTTACGTTCCAAGGAACTTCCTCCAAGGCCGCGAGTCTAACCCTACCGTAAACGACGCCGTTTCGGAAATGGACGAGTTTTTCCACGACTCGATTGCCAAACTCCTCGCCAAAACCGGCGTCTCCGCCTCCGACATCGACGTCCTGGTGGTCAACGTCTCCATGTTCCCGTCAGTCCCGTCGCTGACTTCAAGAATCATCAACCACTACAAGATGAGGGACGACGTGAAGGCTTTCAACCTCACCGGCATGGGGTGCAGTGCAAGCTTGGTATCTCTTGACGTAGTCCAGAACATTCTCAAGTCGCAGAGAAACAAGTGTGCTTTGTTGGTTACTTCAGAGTCCTTGAGCCCTAACTGGTACTCAGGGAACGACAGATCCATGGTCCTCGCCAATTGTTTGTTTCGAACCGGAGGATGCGCTATTCTTTTGAGTAACAAGAGTTGGTTGAAGCATAAAGCCATATTCAAGCTCAAGTGCTTGGTGAGAACACACCATGGCGCCAAAGATGATGCATACGGTTGCTGCAACCAGAAGGAGGACGATGAAGGTAGGCTTGGGTTCTACCTAGGGAAGAATCTCCCTAAGGCAGCAACAAGAGCCTTTGTTGACAATTTAAGAGTCTTATCCCCCAAGATTTTACCAGCTAGGGAGATGCTTAGATTCTTACTCGTTTCCCTCCTCAGAAAATTTAAATCTGCCACGTCAGCACCTAAAGGAGCAGCTCTAGCAACAAACACAAAATATGGTAATAAATCGCCTTTGAATTTAAAGACCGGAGTAGATCATTTCTGTTTGCACACCGGAGGGAAGGCGGTTATTGATGGGATAGGGATGAGTTTGGATCTGACTGAGTATGATCTGGAGCCGGCGAGGATGACGCTGCACCGGTTTGGAAACACGTCAGCAAGCAGCTTGTGGTATGTGTTAGCGTACATGGAAGCTAAGAGGAGGCTCAAGAGAGGGGACAGGGTATTGATGATAAGCTTTGGTGCGGGATTTAAATGTAACAGCTGTTTGTGGCAAGTAATGAAGGATGTTGAGGATAGGAATGTGTGGGATGAATGCATTGATCACTATCCACCACACTCCCTTGCCAACCCTTTCATGGAGCAGTACGGTTGGATCAATGCTGTTGAGGATCCAACCAACTTCAACCTTCTTAGTCAGCCTATTTGA 1452 0.4752 MELFSSSLTATTILLYVVTPLLYLCFLVWKVVNHKRDHECYILGYQCYKPGDDRKLGTQCSGSIISRNKTLALNDFKFLLKAIVRSGLGEETYVPRNFLQGRESNPTVNDAVSEMDEFFHDSIAKLLAKTGVSASDIDVLVVNVSMFPSVPSLTSRIINHYKMRDDVKAFNLTGMGCSASLVSLDVVQNILKSQRNKCALLVTSESLSPNWYSGNDRSMVLANCLFRTGGCAILLSNKSWLKHKAIFKLKCLVRTHHGAKDDAYGCCNQKEDDEGRLGFYLGKNLPKAATRAFVDNLRVLSPKILPAREMLRFLLVSLLRKFKSATSAPKGAALATNTKYGNKSPLNLKTGVDHFCLHTGGKAVIDGIGMSLDLTEYDLEPARMTLHRFGNTSASSLWYVLAYMEAKRRLKRGDRVLMISFGAGFKCNSCLWQVMKDVEDRNVWDECIDHYPPHSLANPFMEQYGWINAVEDPTNFNLLSQPI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo18g0203 483 PANTHER 3-KETOACYL-COA SYNTHASE 14 473 - -
Amo18g0203 483 Pfam FAE1/Type III polyketide synthase-like protein 34 321 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo18g0203 483 CDD CHS_like 21 432 - -
Amo18g0203 483 PANTHER 3-KETOACYL-COA SYNTHASE 14 473 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo18g0203 483 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 352 433 IPR013747 -
Amo18g0203 483 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 466 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo18g0203 483 SUPERFAMILY Thiolase-like 33 435 IPR016039 GO:0016746
Amo18g0203 483 Gene3D - 84 434 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo18g0203 Amo-Chr18 2888908 2890950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo18g0203 28 478 Acyl Lipid Metabolism Gene Families AT2G28630 65.864 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo18g0203 K15397 - gmx:100776947 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0203 18 2888908 2890950 Amo18g0203 18 2888908 2890950 ECH
Amo18g0203 18 2888908 2890950 Amo13g0376 13 5115743 5117659 ECH
Amo18g0203 18 2888908 2890950 Amo08g1049 08 17842850 17844966 hybridization
Amo18g0203 18 2888908 2890950 Amo13g0376 13 5115743 5117659 PCT
Amo13g0376 13 5115743 5117659 Amo18g0203 18 2888908 2890950 PCT