Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0376 ATGGATCTCATCACTTTACTAACCCTCCTTCCAGCATTGTACTTGTGTTTCCTGATCTGGAACTTGTTCGATCAGAAAAGGGACCAAGAGTGCTACATATTAGACTACCAATGTTACAAACCTTCTGATGATAGAAAGCTAGGCACAGAGTTCTGCGGCAGAGTCATCAAAAGATCCCAATCCTTGGGCCTTGATGAGTACAAGTTCCTCCTCAAAGCCATTGTTAGCTCCGGCATTGGTGAGCAAACTTACGCTCCAAGAAACGTCTTCGACGGCCGCGAATCCAACCCTACCCTTACCGACGGTATTGCGGAAATGGAGGAGTTTTTCAACGATAGCATTGAAAAATTGTTGTCGAGGACAGGTGTAAACCCATCGGAGATTGATGTGTTGGTTGTTAATATTTCAATGCTGGCGGTTCTTCCTTCTTTGTCCTCCAGAATCATCAACAAGTACAAGCTAAGGCATGATATCAAGGTCTACAACCTCACCGGTATGGGGTGTAGTGCTAGTCTTATTTCTCTGGACATTGTAAAGAACATTTTCAAGTCGCAGAGGAATAAGCTAGCACTCTTGGTAACTTCAGAGAGCTTGAGTCCAAATTGGTATTCAGGTAACGAGAGATCAATGATTCTAGCTAACTGCTTGTTTCGCTGCGGCGGTTGCGCGATTTTGCTGACGAACAAGAGGACATTGAAGCACAAATCAATGTTCAAATTGAAGTGTTTGGTGAGAACTCATCATGGAGCTAGAGATGAAGCTTATGGTTGTTGCATTCAAAAGGAAGATGAACAGGGTAGACTTGGTTTTCACCTTGGGAAAACCCTCCCAAAAGCAGCAACAAGAGCTTTCATTGACAATTTGAGGGTAATTTCACCCAAGATTCTTCCAACAAGGGAATTACTAAGATTCTTTGTTGTATACCTAATAAAGAAAATCACAATGTTGGGAAAAAGTAACAATTATAACACTCTCAAGGCTAGTTCTGGAGTTATCACAACGACGAAATCGCCGTTGAATTTTAAGACCGGTGTGGATCATTTCTGTATCCACACCGGAGGTAAAGCCGTTATAGACGGAATAGGAATAAGTTTGGATCTGGCTGAGTATGACCTCGAACCGGCGCGGATGACTCTGCACCGGTTCGGGAACACCTCAGCCAGTAGCCTTTGGTATGTTCTAGGGTACATGGAGGCAAAGAAGAGGCTGAGAAAAGGTGAGAGGGTGTTCATGATAAGCTTTGGTGCTGGCTTTAAATGCAATAGCTGTTTGTGGGAAGTGATGAGAGATCTCAAAGGTGATCAAGAAAATGTGTGGGCCGATTGCATTGATAACTACCCACCAAAATCATTGTCTAACCCTTTCATGGAGAAGTATAGTTGGATCAATGATGTTGAGGATGAAAGCACCGCTGAGATCCCTGATTTTCTCAAGTAA 1437 0.4328 MDLITLLTLLPALYLCFLIWNLFDQKRDQECYILDYQCYKPSDDRKLGTEFCGRVIKRSQSLGLDEYKFLLKAIVSSGIGEQTYAPRNVFDGRESNPTLTDGIAEMEEFFNDSIEKLLSRTGVNPSEIDVLVVNISMLAVLPSLSSRIINKYKLRHDIKVYNLTGMGCSASLISLDIVKNIFKSQRNKLALLVTSESLSPNWYSGNERSMILANCLFRCGGCAILLTNKRTLKHKSMFKLKCLVRTHHGARDEAYGCCIQKEDEQGRLGFHLGKTLPKAATRAFIDNLRVISPKILPTRELLRFFVVYLIKKITMLGKSNNYNTLKASSGVITTTKSPLNFKTGVDHFCIHTGGKAVIDGIGISLDLAEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLRKGERVFMISFGAGFKCNSCLWEVMRDLKGDQENVWADCIDNYPPKSLSNPFMEKYSWINDVEDESTAEIPDFLK* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0376 478 PANTHER 3-KETOACYL-COA SYNTHASE 1 468 - -
Amo13g0376 478 PANTHER 3-KETOACYL-COA SYNTHASE 1 468 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo13g0376 478 Gene3D - 69 427 IPR016039 GO:0016746
Amo13g0376 478 SUPERFAMILY Thiolase-like 243 428 IPR016039 GO:0016746
Amo13g0376 478 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo13g0376 478 SUPERFAMILY Thiolase-like 17 231 IPR016039 GO:0016746
Amo13g0376 478 CDD CHS_like 19 425 - -
Amo13g0376 478 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 461 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo13g0376 478 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 345 426 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0376 Amo-Chr13 5115743 5117659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0376 19 475 Acyl Lipid Metabolism Gene Families AT2G28630 70.282 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0376 K15397 - gmx:100809149 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0376 13 5115743 5117659 Amo13g0376 13 5115743 5117659 ECH
Amo18g0203 18 2888908 2890950 Amo13g0376 13 5115743 5117659 ECH
Amo18g0203 18 2888908 2890950 Amo13g0376 13 5115743 5117659 PCT
Amo08g1049 08 17842850 17844966 Amo13g0376 13 5115743 5117659 PCT
Amo13g0376 13 5115743 5117659 Amo18g0203 18 2888908 2890950 PCT
Amo13g0376 13 5115743 5117659 Amo08g1049 08 17842850 17844966 PCT