Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1049 ATGGAGTTGTTTTCCTCTTCCCTCACTGCTACTACTATACTACTCTATGTAGTAACGCCATTATTGTACTTGTGCTTCCTTGTGTGGAAGGTGGTGAATCACAAAAGGGACCATGAATGCTACATTTTAGGGTACCAATGCTACAAGCCAGGCGATGATAGAAAGCTTGGAACTCAATGCAGCGGCAGCATCATATCCAGGAACAAAACCTTGGCTCTCAACGACTTCAAGTTCCTTCTCAAAGCCATTGTCAGCTCCGGCATTGGCGAAGAAACTTACGTTCCAAGGAACTTCCTCCAAGGCCGCGAGTCTAACCCTACCGTAAACGACGCCGTTTCGGAAATGGACGAGTTTTTCCACGACTCGATCGCCAAACTCCTCGCCAAAACCGGCGTCTCCGCCTCTGACATCGACGTCCTAGTGGTCAACGTCTCCATGTTCCCGTCAGTCCCGTCGCTGACTTCAAGAATCATCAATCACTACAAGATGAGGGACGACGTGAAGGCTTTCAACCTCACCGGCATGGGGTGCAGTGCAAGCTTGGTATCTCTTGACGTAGTCCAGAACATTCTCAAGTCGCAGAGAAACAAGTGTGCTTTGTTGGTTACTTCAGAGTCCTTGAGCCCTAACTGGTACTCAGGGAACGACAGATCCATGGTCCTCGCCAATTGTTTGTTTCGAACCGGAGGATGCGCTATTCTTTTGAGTAACAAGAGTTGGTTGAAGCATAAAGCCATATYCAAGCTCAAGTGCTTGGTGAGAACCCACCATGGCGCCAAAGATGATGCATACGGTTGTTGCAACCAAAAGGAGGACGATGAAGGTAGGCTTGGGTTCTACCTAGGGAAGAATCTCCCTAAGGCAGCAACAAGAGCCTTTGTTGACAATTTAAGAGTCTTATCCCCCAAGATTTTACCAGCTAGGGAGATGCTTAGATTCTTACTCGTTTCCCTCCTCAGAAAATTTAAATCTGTCACGTCAGCACCTAAAGTAGCAGCTCTAGCAACAAACACAAAATATGGTAATAAATCGCCTTTGAATTTAAAGACCGGAGTAGATCATTTCTGTTTGCACACGGGAGGGAAGGCGGTTATTGATGGGATAGGGATGAGTTTGGATCTGAGTGAGTATGATCTGGAGCCGGCGAGGATGACGCTGCACCGGTTTGGGAACACGTCAGCAAGCAGCTTGTGGTATGTTTTAGCGTACATGGAAGCTAAGAGGAGGCTCAAGAGAGGGGACAGGGTATTGATGATAAGCTTTGGTGCGGGATTTAAATGTAACAGCTGTTTGTGGCAAGTAATGAAGGATGTTGAGGATAGGAATGTGTGGGATGAATGCATTGATCAGTATCCACCACACTCCCTTGCCAACCCCTTCATGGAGCAGTACGGTTGGATCAATGCTGTTCAGGATCCAACCAACTTCAACCTTCTTAGTCAACCTATTTGA 1452 0.4718 MELFSSSLTATTILLYVVTPLLYLCFLVWKVVNHKRDHECYILGYQCYKPGDDRKLGTQCSGSIISRNKTLALNDFKFLLKAIVSSGIGEETYVPRNFLQGRESNPTVNDAVSEMDEFFHDSIAKLLAKTGVSASDIDVLVVNVSMFPSVPSLTSRIINHYKMRDDVKAFNLTGMGCSASLVSLDVVQNILKSQRNKCALLVTSESLSPNWYSGNDRSMVLANCLFRTGGCAILLSNKSWLKHKAIXKLKCLVRTHHGAKDDAYGCCNQKEDDEGRLGFYLGKNLPKAATRAFVDNLRVLSPKILPAREMLRFLLVSLLRKFKSVTSAPKVAALATNTKYGNKSPLNLKTGVDHFCLHTGGKAVIDGIGMSLDLSEYDLEPARMTLHRFGNTSASSLWYVLAYMEAKRRLKRGDRVLMISFGAGFKCNSCLWQVMKDVEDRNVWDECIDQYPPHSLANPFMEQYGWINAVQDPTNFNLLSQPI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1049 483 PANTHER 3-KETOACYL-COA SYNTHASE 14 473 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo08g1049 483 CDD CHS_like 21 432 - -
Amo08g1049 483 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 466 IPR012392 GO:0006633|GO:0016020|GO:0016747
Amo08g1049 483 SUPERFAMILY Thiolase-like 33 435 IPR016039 GO:0016746
Amo08g1049 483 PANTHER 3-KETOACYL-COA SYNTHASE 14 473 - -
Amo08g1049 483 Gene3D - 81 434 IPR016039 GO:0016746
Amo08g1049 483 Pfam FAE1/Type III polyketide synthase-like protein 34 321 IPR013601 GO:0006633|GO:0016020|GO:0016747
Amo08g1049 483 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 352 433 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1049 Amo-Chr8 17842850 17844966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1049 23 478 Acyl Lipid Metabolism Gene Families AT1G07720 64.783 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1049 K15397 - gmx:100776947 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0203 18 2888908 2890950 Amo08g1049 08 17842850 17844966 hybridization
Amo08g1049 08 17842850 17844966 Amo13g0376 13 5115743 5117659 PCT
Amo13g0376 13 5115743 5117659 Amo08g1049 08 17842850 17844966 PCT