Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0297 ATGGGGAGGATGTTTGTGACACATCTTGAAGGGAAGTTCTACAGCTGTAAGCACTGCCGCACCCATCTAGCTCTTTGTCAAGACATCGTCTCCAAGTCTTTCCACTGCAGACATGGGAAAGCTTATCTCTTCAGTAAGGTTGTGAACGTTTCTCTTGGTGAAAACGAGGAGAGACAGATGATGACCGGGTGGCATACTGTGGCAGACATTTTCTGTGTTGGATGTGGATCGATTGTGGGTTGGAAATATGAAACTGCCCATGAAAAAACCCAGAAGTACAAGGAAGGAAAATCTGTCCTTGAACGGTACAAGGTTTCAGGTCCTGATGGCAGCAATTATTGGGTCAGCCATGAGGCACATGTTGGTGGGAGTGATGTAGATGATGCTTAG 390 0.4641 MGRMFVTHLEGKFYSCKHCRTHLALCQDIVSKSFHCRHGKAYLFSKVVNVSLGENEERQMMTGWHTVADIFCVGCGSIVGWKYETAHEKTQKYKEGKSVLERYKVSGPDGSNYWVSHEAHVGGSDVDDA* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0297 129 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 14 106 IPR004910 -
Amo17g0297 129 ProSiteProfiles Yippee domain profile. 12 109 IPR034751 -
Amo17g0297 129 PANTHER PROTEIN YIPPEE-LIKE 1 129 - -
Amo17g0297 129 PANTHER PROTEIN YIPPEE-LIKE CG15309-RELATED 1 129 IPR039058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0297 Amo-Chr17 4835034 4838486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0297 - - cit:102609322 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0297 17 4835034 4838486 Amo17g0297 17 4835034 4838486 ECH
Amo17g0297 17 4835034 4838486 Amo07g0499 07 5612802 5616236 hybridization
Amo10g1074 10 21410644 21413634 Amo17g0297 17 4835034 4838486 PCT
Amo17g0297 17 4835034 4838486 Amo10g1074 10 21410644 21413634 PCT