Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0289 GAGGAACACATTGAGATTTTGAAGAAAGGGATGGGCAATAGCATGGTGACTTACACCAAATACAAAAGCTTCTTGTTCTTTATCAAAAAGTACAAGGAAACTCAGCATGTTCCACCTCATGACCTCAAGGATGCATTCTCCGAGTTCGCCGGAGGAGCCTCCCACATGTCTGCGGAGCAGCTCCTCCGGTTCTTGGTGGAGCACCAAGGCGAACAAGGCTGCACCTTATCCGATTCGGAGAAAATCCTTGAGAAAATTTTAAGATTGAAAAGGCCGCCGACGCAGGAGGAGGAGGAGGAAGAGTTACTAGAAAGTGTTGATGTTGATAATCAACAAAGAAAGCAAGAGATAACACTTGATGACTTGTTCCATTTCTTGCTTCTTGATGAATCCAATGGACCCTTGAAAGCCGAGGTACACCATGATATGAGTGCTCCATTGTCTCATTATTTCATATACTCAGGACACAATTCCTACCTAACAGGGAATCAAATAAGCAGTGATTGCAGTGAAGAACCAATCATAATGGCCTTGAAGCGCGGCGTGCGAGTAATCGAGCTAGATTTATGGCCAACTGCAAATAAAGATGACATCAAAGTAGATCATGGATGGACACTAACGAATCCTGTTTCAGCTATCAAATGCCTTGAATCCATAAAGGAATATGCTTTTTTTGCATCTGAGTATCCAGTGATCATAACTATAGAAGATCATTTAACAAAAGATCTTAGAGATAAATTTGCAGAGATGGCAACTCAGATTTTTGGAGAAGTGCTTTTCAAACCTGAAACAGGTTGTTTGAAAGAATTTCCTTCACCGGAATCACTGAAAAACAGGATAGTTATATCCACCAAGCCTCCAAAAGAAAGCTTCGAGGCGAATCGAATCAAGGACAATGGAAACTCTTCTCCTATGCAAAATGGAAGTGATTCATCTGAGGAAGAAACATGGGGAAAAGATTCCCCAGATTCCATGCAAAATGAAAGTGATGGTGATAATGAAGGAGATAACAATTCATGTGAATGTGACAAGAAATCATACCAACAATTTTCACCTGATTACAAAAGCTTAATCACAATTCAGAATAGAAAATTAAAGGGTAGTTTGAAGGATAAACTGAACCCTGATGGTGATCTTAGACGCCTTAGTTGGAGTGAGAAGACCCTTCTAAAGGCCTTAGAATCTCATGGAACAGACATTGTTAGGTTCACCCAGAAAAATATATTAAGGGTATATCCAAGCGCGATGCGAGTCAAATCCACAAATTTTAAACCACATATTGGGTGGATTTATGGTGCTCAAATGGTTGCATTCAATATGCAGGGGCATGGAAAACAACTATGGTTGATGCAAGGGATGTTCAGAGCAAATGGAGGATGTGGTTATGTGAAAAAGCCTCAAATTCTAATGCAGAAACATCAGTGTGACAATGATTATGATCCTAAAGTTAAAATGCCAGTGAAGAAGACATTGAAGGTAAAAGTGTACCTGGGGAATGGATGGAACTTAGATTTCAGTCCTACACACTTTGATAAGTGTTCTCCCCCTGATTTTTTTGTAAAGATTTGTACGGTTGGAGTTGGAGCTGATTGTTGGAAGAAGAAAACAAAGGTAATAATGGACAAGTGGTTCCCTGTTTGGGAAGAAGAGTTTGAATTCCCATTAACGGTTCCAGAGCTTGCTTTGCTGAGAATACAAGTGAAAGACAAAGATCAAGGCAAAGATGATTTTGCTGGCCAAACATGCTTGCCAGTTTCAGAGCTTAAGCTTGGATTTCGTTCTGTTCCTTTGTATGACACAAAGGGAGACAAGTTCAACCATGTAAAGTTGTTAATGCGCTTTCAATTTCAATGA 1854 0.4008 EEHIEILKKGMGNSMVTYTKYKSFLFFIKKYKETQHVPPHDLKDAFSEFAGGASHMSAEQLLRFLVEHQGEQGCTLSDSEKILEKILRLKRPPTQEEEEEELLESVDVDNQQRKQEITLDDLFHFLLLDESNGPLKAEVHHDMSAPLSHYFIYSGHNSYLTGNQISSDCSEEPIIMALKRGVRVIELDLWPTANKDDIKVDHGWTLTNPVSAIKCLESIKEYAFFASEYPVIITIEDHLTKDLRDKFAEMATQIFGEVLFKPETGCLKEFPSPESLKNRIVISTKPPKESFEANRIKDNGNSSPMQNGSDSSEEETWGKDSPDSMQNESDGDNEGDNNSCECDKKSYQQFSPDYKSLITIQNRKLKGSLKDKLNPDGDLRRLSWSEKTLLKALESHGTDIVRFTQKNILRVYPSAMRVKSTNFKPHIGWIYGAQMVAFNMQGHGKQLWLMQGMFRANGGCGYVKKPQILMQKHQCDNDYDPKVKMPVKKTLKVKVYLGNGWNLDFSPTHFDKCSPPDFFVKICTVGVGADCWKKKTKVIMDKWFPVWEEEFEFPLTVPELALLRIQVKDKDQGKDDFAGQTCLPVSELKLGFRSVPLYDTKGDKFNHVKLLMRFQFQ* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0289 617 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 383 469 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0289 617 SMART plcy_3 354 470 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0289 617 MobiDBLite consensus disorder prediction 283 344 - -
Amo17g0289 617 CDD C2_PLC_like 488 617 - -
Amo17g0289 617 Pfam Phosphatidylinositol-specific phospholipase C, X domain 143 285 IPR000909 -
Amo17g0289 617 Gene3D C2 domain 483 617 IPR035892 -
Amo17g0289 617 SUPERFAMILY PLC-like phosphodiesterases 141 471 IPR017946 GO:0006629|GO:0008081
Amo17g0289 617 SMART C2_3c 490 597 IPR000008 -
Amo17g0289 617 Gene3D - 37 133 - -
Amo17g0289 617 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 141 285 - -
Amo17g0289 617 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 11 617 - -
Amo17g0289 617 Gene3D Phosphatidylinositol (PI) phosphodiesterase 138 480 IPR017946 GO:0006629|GO:0008081
Amo17g0289 617 PRINTS Phospholipase C signature 429 447 IPR001192 GO:0035556
Amo17g0289 617 PRINTS Phospholipase C signature 146 164 IPR001192 GO:0035556
Amo17g0289 617 PRINTS Phospholipase C signature 172 192 IPR001192 GO:0035556
Amo17g0289 617 PRINTS Phospholipase C signature 583 593 IPR001192 GO:0035556
Amo17g0289 617 PRINTS Phospholipase C signature 269 286 IPR001192 GO:0035556
Amo17g0289 617 PRINTS Phospholipase C signature 408 429 IPR001192 GO:0035556
Amo17g0289 617 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 11 617 IPR001192 GO:0035556
Amo17g0289 617 ProSiteProfiles C2 domain profile. 469 599 IPR000008 -
Amo17g0289 617 SMART plcx_3 141 285 IPR000909 -
Amo17g0289 617 Pfam C2 domain 491 590 IPR000008 -
Amo17g0289 617 SUPERFAMILY EF-hand 13 143 IPR011992 -
Amo17g0289 617 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 382 467 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo17g0289 617 MobiDBLite consensus disorder prediction 296 312 - -
Amo17g0289 617 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 490 616 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0289 Amo-Chr17 4727816 4731063 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0289 21 617 Acyl Lipid Metabolism Gene Families AT2G40116 52.581 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0289 K05857 - gmx:100820253 897.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0289 17 4727816 4731063 Amo07g0504 07 5716089 5719511 hybridization
Amo10g1051 10 20594864 20598819 Amo17g0289 17 4727816 4731063 PCT
Amo17g0289 17 4727816 4731063 Amo10g1051 10 20594864 20598819 PCT