Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g1051 ATGGTTAAGAAAAAGGAGATGAAAAAGGAGATCTACAAGTACAAGGTGTTGAATTTCTTGACCAGAAAATTTGAATTGAAAAAGCAAGAACCATCTTTGGACATTAAGGAAGCATTTCACATGTTTGCAAAAGGTGGAGAATACATGTCAAATGATCAGCTTCTAGGGTTCATGTTGGAGCATCAAGGTGATAAGAACTGCACCTTAATGGATTTGGAGGTGGTTTTGTTGCAAATTGCTGGGAATTCCAACACTACGAGTAGGGAACAAGGGCTCAGCCTCATGGAGTTCATCAATTTTCTGCTTCTTGATGATTTCAATGGTCCATTGAAAACTGAGGTTCACCATGATATGAGGGCTCCCTTGTCACATTACTTTATGTACACTGGACACAATTCCTATCTGACTGGGAATCAACTCACAAGTGATTGCAGTGACAAGCCGATTATTGAGGCTTTGCAACAAGGAGTTCGAGTGATTGAACTCGATCTGTGGCCATCTTCCAATGAAGATGGTATTAAAGTAGTTCACGGAAGGACTCTTACCACTCCAGTTTTACTAACCAAATGTCTGGAATCCATAAAGAAATATGCTTTTGTCAAATCTGATTTTCCAGTGATACTAACTTTGGAAGACCACTTAACATCAAAACTTCAGGCCAAATTCACAGAAAAAGCAACTCAAATATTTGGAGACATGCTTTATTATCCCAAGACAGATTACTTGACAGAATTCCCTTCACCAGAATCATTGAAAAATCTAGTTGTTATATCCACCAAACCTCCTAAAGAATATGCTCATTCTAATAGTGTTATGGACAAGGGCAGCAATAATAACCATATGCAAAATGAAAGCGAACTGTCCTCCGGAGAAGAAGAAGAATTATGGAACGTGGAATTGCCAGATTCCATGGCTCAATTGACAACTGAGGAGAATCAGAATGTAAGTGATGAAGACACAAATATATGTGATTTCAAACCAAGCCAGCAAAATGCACCTGAATACAAACACTTGATTGCAATCCATGGTGGGAAATCAAAAGGTTCTGTGAAGGATCGACTGAAAGCCGATAGCGAAGTAGTTAAACGGCTAAGTTTGAGTGAGAAGAAACTCAAAAGTGCTTCTGAATCTCATGGAAAAGACATTATTAGGTTCACACAGAAAAATATACTGAGAGTCTATCCTAAAGGAGAACGCATCAAATCCACAAATTTTCGGCCGCATTTAGGGTGGATGTATGGAGCTCAAATGGTGGCATTCAATATGCAGGGGCATGGCAAATCGCTATGGTTGATGCAAGGAATGTTTAGAGCAAATGGAGGATGTGGTTATCTTAGAAAGCCCGAATTTCTGACCCGAACAAATTCACATGAAGACGAGTTTGATCCTAGAAGAACATTGCCAGTGAAGCAGACATTAAGGGTAAATGTTTACCTAGGTGTTGGGTGGAGATCCGATTTCGGTGCAACACACTTTGATCTATTTTCTCCTCCAGATTTTTACACCAAGGTATGTCTTGTTGGGGTGCCAACTGATTGTGTAAAGAAAAGAACAAGGGTAATCAAGGACAATTGGCTTCCTGTTTGGGATGAAGAGTTTGAATTTCCTTTAACAGTTCCTGAGCTTGCTTTGCTGCGGATCGAAGTAAAGGATAAAGACAAGGGGAAGGATGACTTTGCAGGGCAGACTTGTTTGCCAGTATCCGAACTGCGACTCGGATTCCGGTCAGTCGCCCTGCATGACAGGAAGGGAAAGAAATTTAAATCTGTGAAGCTTCTAATGAGGTTTCAGCTTGAAATATTTTGA 1806 0.4014 MVKKKEMKKEIYKYKVLNFLTRKFELKKQEPSLDIKEAFHMFAKGGEYMSNDQLLGFMLEHQGDKNCTLMDLEVVLLQIAGNSNTTSREQGLSLMEFINFLLLDDFNGPLKTEVHHDMRAPLSHYFMYTGHNSYLTGNQLTSDCSDKPIIEALQQGVRVIELDLWPSSNEDGIKVVHGRTLTTPVLLTKCLESIKKYAFVKSDFPVILTLEDHLTSKLQAKFTEKATQIFGDMLYYPKTDYLTEFPSPESLKNLVVISTKPPKEYAHSNSVMDKGSNNNHMQNESELSSGEEEELWNVELPDSMAQLTTEENQNVSDEDTNICDFKPSQQNAPEYKHLIAIHGGKSKGSVKDRLKADSEVVKRLSLSEKKLKSASESHGKDIIRFTQKNILRVYPKGERIKSTNFRPHLGWMYGAQMVAFNMQGHGKSLWLMQGMFRANGGCGYLRKPEFLTRTNSHEDEFDPRRTLPVKQTLRVNVYLGVGWRSDFGATHFDLFSPPDFYTKVCLVGVPTDCVKKRTRVIKDNWLPVWDEEFEFPLTVPELALLRIEVKDKDKGKDDFAGQTCLPVSELRLGFRSVALHDRKGKKFKSVKLLMRFQLEIF* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g1051 601 Pfam Phosphatidylinositol-specific phospholipase C, X domain 118 260 IPR000909 -
Amo10g1051 601 SMART plcy_3 335 452 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo10g1051 601 Pfam C2 domain 472 571 IPR000008 -
Amo10g1051 601 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 116 260 - -
Amo10g1051 601 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 9 600 IPR001192 GO:0035556
Amo10g1051 601 SUPERFAMILY EF-hand 31 118 IPR011992 -
Amo10g1051 601 SMART C2_3c 472 579 IPR000008 -
Amo10g1051 601 ProSiteProfiles C2 domain profile. 453 581 IPR000008 -
Amo10g1051 601 SUPERFAMILY PLC-like phosphodiesterases 116 453 IPR017946 GO:0006629|GO:0008081
Amo10g1051 601 PRINTS Phospholipase C signature 121 139 IPR001192 GO:0035556
Amo10g1051 601 PRINTS Phospholipase C signature 147 167 IPR001192 GO:0035556
Amo10g1051 601 PRINTS Phospholipase C signature 244 261 IPR001192 GO:0035556
Amo10g1051 601 PRINTS Phospholipase C signature 390 411 IPR001192 GO:0035556
Amo10g1051 601 PRINTS Phospholipase C signature 411 429 IPR001192 GO:0035556
Amo10g1051 601 PRINTS Phospholipase C signature 565 575 IPR001192 GO:0035556
Amo10g1051 601 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 472 597 IPR035892 -
Amo10g1051 601 SMART plcx_3 116 260 IPR000909 -
Amo10g1051 601 Gene3D C2 domain 467 601 IPR035892 -
Amo10g1051 601 Gene3D - 27 108 - -
Amo10g1051 601 Gene3D Phosphatidylinositol (PI) phosphodiesterase 113 464 IPR017946 GO:0006629|GO:0008081
Amo10g1051 601 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 9 600 - -
Amo10g1051 601 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 365 451 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo10g1051 601 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 358 450 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo10g1051 601 CDD C2_PLC_like 470 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g1051 Amo-Chr10 20594864 20598819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g1051 12 599 Acyl Lipid Metabolism Gene Families AT2G40116 53.707 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g1051 K05857 - gmx:100803435 793.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g1051 10 20594864 20598819 Amo17g0289 17 4727816 4731063 PCT
Amo10g1051 10 20594864 20598819 Amo07g0504 07 5716089 5719511 PCT
Amo17g0289 17 4727816 4731063 Amo10g1051 10 20594864 20598819 PCT
Amo07g0504 07 5716089 5719511 Amo10g1051 10 20594864 20598819 PCT