Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g0504 ATGGGCAATAGCATGGTGACTTACACCAAATACAAAAGCTTCTTGTTCTTTATCAAAAAGTACAAGGAAACTCAGCATGTTCCACCTCATGACCTCAAGGATGCATTCTCCGAGTTCGCCGGAGGAGCCTCCCACATGTCTGCGGAGCAGCTCCTCCGGTTCTTGGTGGAGCACCAAGGCGAACAAGGCTGCACCTTATCCGATTCGGAGAAAATCCTTGAGAAAATTTTAAGATTGAAAAGGCCGCCGACGCAGGAGGAGGAGGAGGAAGAGTTACTAGAAAGTGTTGATGTTGATAATCAACAAAGAAAGCAAGAGATAACACTTGATGACTTGTTCCATTTCTTGCTTCTTGATGAATCCAATGGACCCTTGAAAGCCGAGGTACACCATGATATGAGTGCTCCATTGTCTCATTATTTCATATACTCAGGACACAATTCCTACCTAACAGGGAATCAAATAAGCAGTGATTGCAGTGAAGAACCAATCATAATGGCCTTGAAGCGCGGCGTGCGAGTAATCGAGCTAGATTTATGGCCAACTGCAAATAAAGATGACATCAAAGTAGATCATGGATGGACACTAACGAATCCTGTTTCAGCTATCAAATGCCTTGAATCCATAAAGGAATATGCTTTTTTTGCATCTGAGTATCCAGTGATCATAACTATAGAAGATCATTTAACAAAAGATCTTAGAGATAAATTTGCAGAGATGGCAACTCAGATTTTTGGAGAAGTGCTTTTCAAACCTGAAACAGGTTGTTTGAAAGAATTTCCTTCACCGGAATCACTGAAAAACAGGATAGTTATATCCACCAAGCCTCCAAAAGAAAGCTTCGAGGCGAATCGAATCAAGGACAATGGAAACTCTTCTCCTATGCAAAATGGAAGTGATTCATCTGAGGAAGAAACATGGGGAAAAGATTCCCCAGATTCCATGCAAAATGAAAGTGATGGTGATAATGAAGGAGATAACAATTCATGTGAATGTGACAAGAAATCATACCAACAATTTTCACCTGATTACAAAAGCTTAATCACAATTCAGAATAGAAAATTAAAGGGTAGTTTGAAGGATAAACTGAACCCTGATGGTGATCTTAGACGCCTTAGTTGGAGTGAGAAGACCCTTCTAAAGGCCTTAGAATCTCATGGAACAGACATTGTTAGGTTCACCCAGAAAAATATATTAAGGGTATATCCAAGCGCGATGCGAGTCAAATCCACAAATTTTAAACCACATATTGGGTGGATTTATGGTGCTCAAATGGTTGCATTCAATATGCAGGGGCATGGAAAACAACTATGGTTGATGCAAGGGATGTTCAGAGCAAATGGAGGATGTGGTTATGTGAAAAAGCCTCAAATTCTAATGCAGAAACATCAGTGTGACAATGATTATGATCCTAAAGTTAAAATGCCAGTGAAGAAGACATTGAAGGTAAAAGTGTACCTGGGGAATGGATGGAACTTAGATTTCAGTCCTACACACTTTGATAAGTGTTCTCCCCCTGATTTTTTTGTAAAGATTTGTACGGTTGGAGTTGGAGCTGATTGTTGGAAGAAGAAAACAAAGGTAATAATGGACAAGTGGTTCCCTGTTTGGGAAGAAGAGTTTGAATTCCCATTAACGGTTCCAGAGCTTGCTTTGCTGAGAATACAAGTGAAAGACAAAGATCAAGGCAAAGATGATTTTGCTGGCCAAACATGCTTGCCAGTTTCAGAGCTTAAGCTTGGATTTCGTTCTCTTCCTTTGTATGACACAAAGGGAGACAAGTTCAACCATGTAAAGTTGTTAATGCGCTTTCAATTTCAATGA 1824 0.4008 MGNSMVTYTKYKSFLFFIKKYKETQHVPPHDLKDAFSEFAGGASHMSAEQLLRFLVEHQGEQGCTLSDSEKILEKILRLKRPPTQEEEEEELLESVDVDNQQRKQEITLDDLFHFLLLDESNGPLKAEVHHDMSAPLSHYFIYSGHNSYLTGNQISSDCSEEPIIMALKRGVRVIELDLWPTANKDDIKVDHGWTLTNPVSAIKCLESIKEYAFFASEYPVIITIEDHLTKDLRDKFAEMATQIFGEVLFKPETGCLKEFPSPESLKNRIVISTKPPKESFEANRIKDNGNSSPMQNGSDSSEEETWGKDSPDSMQNESDGDNEGDNNSCECDKKSYQQFSPDYKSLITIQNRKLKGSLKDKLNPDGDLRRLSWSEKTLLKALESHGTDIVRFTQKNILRVYPSAMRVKSTNFKPHIGWIYGAQMVAFNMQGHGKQLWLMQGMFRANGGCGYVKKPQILMQKHQCDNDYDPKVKMPVKKTLKVKVYLGNGWNLDFSPTHFDKCSPPDFFVKICTVGVGADCWKKKTKVIMDKWFPVWEEEFEFPLTVPELALLRIQVKDKDQGKDDFAGQTCLPVSELKLGFRSLPLYDTKGDKFNHVKLLMRFQFQ* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g0504 607 Gene3D - 27 123 - -
Amo07g0504 607 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 606 IPR035892 -
Amo07g0504 607 SMART C2_3c 480 587 IPR000008 -
Amo07g0504 607 MobiDBLite consensus disorder prediction 286 302 - -
Amo07g0504 607 MobiDBLite consensus disorder prediction 268 334 - -
Amo07g0504 607 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 131 275 - -
Amo07g0504 607 Gene3D Phosphatidylinositol (PI) phosphodiesterase 128 470 IPR017946 GO:0006629|GO:0008081
Amo07g0504 607 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 373 459 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo07g0504 607 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 607 IPR001192 GO:0035556
Amo07g0504 607 Pfam Phosphatidylinositol-specific phospholipase C, X domain 133 275 IPR000909 -
Amo07g0504 607 PRINTS Phospholipase C signature 259 276 IPR001192 GO:0035556
Amo07g0504 607 PRINTS Phospholipase C signature 419 437 IPR001192 GO:0035556
Amo07g0504 607 PRINTS Phospholipase C signature 162 182 IPR001192 GO:0035556
Amo07g0504 607 PRINTS Phospholipase C signature 398 419 IPR001192 GO:0035556
Amo07g0504 607 PRINTS Phospholipase C signature 573 583 IPR001192 GO:0035556
Amo07g0504 607 PRINTS Phospholipase C signature 136 154 IPR001192 GO:0035556
Amo07g0504 607 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 607 - -
Amo07g0504 607 ProSiteProfiles C2 domain profile. 459 589 IPR000008 -
Amo07g0504 607 SUPERFAMILY EF-hand 5 133 IPR011992 -
Amo07g0504 607 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 372 457 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo07g0504 607 Pfam C2 domain 481 580 IPR000008 -
Amo07g0504 607 Gene3D C2 domain 473 607 IPR035892 -
Amo07g0504 607 SUPERFAMILY PLC-like phosphodiesterases 131 461 IPR017946 GO:0006629|GO:0008081
Amo07g0504 607 SMART plcy_3 344 460 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Amo07g0504 607 SMART plcx_3 131 275 IPR000909 -
Amo07g0504 607 CDD C2_PLC_like 478 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g0504 Amo-Chr7 5716089 5719511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g0504 11 607 Acyl Lipid Metabolism Gene Families AT2G40116 52.419 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g0504 K05857 - gmx:100820253 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0289 17 4727816 4731063 Amo07g0504 07 5716089 5719511 hybridization
Amo10g1051 10 20594864 20598819 Amo07g0504 07 5716089 5719511 PCT
Amo07g0504 07 5716089 5719511 Amo10g1051 10 20594864 20598819 PCT