Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4068 CACGATGATGTTACAACACGGTTGACTAGACTTACATTCCCATTCTCCATTCTCCATTCACCTTCTTCTCATTCCACTTTCTTTTCATATTTGCCTTTACAGTTTTCATATCCTTTACTTACTCACAATATGAGTATTAGTTTTGAGACATTCACGTGGAAAATCCAAAACTTCTCTAAACAGAACACCAAGAATCTACAATCCAAGGCTTTCCGTATAGGACATCATAAATGGAGGATCCGTTTGTATCCATTAAGGAGGGACGTTAACCATTTCTCGTTGTATTTGATGGTTGCGGATTCTCTACCGGCTTATGGTTGGAGCAGAACCACATATTTCAAGTTGGTTGTTACAAATCAGGTTGATGCCAACAAGTCAATTGTAAAGGAGACTCAGCAGAAGTTCAATGGAGGAAATCGCAGTTGGGGCTCAACATTCCTTACCCTGAGTGACTTCTATGATCCTAACCAAGGGTATCTAGTCAATAACACATGTATCATTGAAGCTCATGTTTGTGTCTCCGATGTTCCGCCTCATGCTATCAAATTAAGAAAAACCAGTAGTAGCATTAGTCCAGCAAGTGACTCTATCTCTATCTTGCTTGATGATCAAGAAACAGAATCAACAGATGGGAGCGAGACACTTACTTCCGCGACCTGCAGGTCTAGTCGAACCGAAGATGAAGATGAATGTTCAGATTTAACACTAAAGGACATCATAAATTTGGACAGTTTGGGTAAAGAAGAAGCATCTTTTTTTCCATTGGTGGAAGATGCCTGCATGTGGCATCCTGATCTAATACAGAGCCAGAGGAACCGAAGCGAACGATTCAAAATATGGGCATTCACATCTTTAGGCCAAGTTCTGCATTTCCTCAAGACAAGCAAGGTGAAGGACATGGATGAAGATGGATGTAATTATCTGAAAGGTTTATGGGAGGAGCTTGTTAGGTCCTCAGGATTCAACTTAACTTGGTTGGAGCCTTATGTTCAATCTGCACTGGGAATGAAGTCTCATTTGGAAAGAGCAGCGGGTATGGATGATTTAAGGGACAATGTGGTTGCCATTGAGATCAAGATGAAGAATCTGAGGGGAGAACTTGCTGCTGCAGAAGCTGAGTTTGTGGAAGCAAGGAAAGCTTTGGCTGAGGCAAGAAAAGGTTACAAAGAGATAGATATGAATGATGTGTTAGGCTATTCCATGTTTTAG 1209 0.4111 HDDVTTRLTRLTFPFSILHSPSSHSTFFSYLPLQFSYPLLTHNMSISFETFTWKIQNFSKQNTKNLQSKAFRIGHHKWRIRLYPLRRDVNHFSLYLMVADSLPAYGWSRTTYFKLVVTNQVDANKSIVKETQQKFNGGNRSWGSTFLTLSDFYDPNQGYLVNNTCIIEAHVCVSDVPPHAIKLRKTSSSISPASDSISILLDDQETESTDGSETLTSATCRSSRTEDEDECSDLTLKDIINLDSLGKEEASFFPLVEDACMWHPDLIQSQRNRSERFKIWAFTSLGQVLHFLKTSKVKDMDEDGCNYLKGLWEELVRSSGFNLTWLEPYVQSALGMKSHLERAAGMDDLRDNVVAIEIKMKNLRGELAAAEAEFVEARKALAEARKGYKEIDMNDVLGYSMF* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4068 402 MobiDBLite consensus disorder prediction 203 224 - -
Amo16g4068 402 SMART math_3 50 152 IPR002083 GO:0005515
Amo16g4068 402 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 47 190 IPR008974 GO:0005515
Amo16g4068 402 ProSiteProfiles MATH/TRAF domain profile. 48 171 IPR002083 GO:0005515
Amo16g4068 402 MobiDBLite consensus disorder prediction 203 221 - -
Amo16g4068 402 Pfam MATH domain 55 172 IPR002083 GO:0005515
Amo16g4068 402 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 48 382 - -
Amo16g4068 402 CDD MATH 50 171 IPR002083 GO:0005515
Amo16g4068 402 SUPERFAMILY TRAF domain-like 50 175 - -
Amo16g4068 402 Coils Coil 346 387 - -
Amo16g4068 402 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 48 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4068 Amo-Chr16 153137033 153139753 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4068 - - adu:107492716 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4068 16 153137033 153139753 Amo06g0409 06 5521244 5524707 hybridization
Amo12g3243 12 121240341 121250154 Amo16g4068 16 153137033 153139753 PCT