Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0409 ATGGAGAATTATCAGCAAGGAAAGGAGATTGAGAAGTTCACATGGGTAATTGAAAATTTCTCAAAGAAGAACACCAAGAAGCTACGATCCAAGTCCTTCCAAGTTGGTGGTTGTAAATGGCAGATACATGTGCATCGAATAGAAAAAGCAAAAGGTATGGAGTATTTATCATTGTATTTGAAGGTTGGAGGTTCTGTACCATCATTTGGATGGAGCAAATATGCATATTTCAGTTTAGCTCTAATTAATCATATGGATCCCCAAAAGTCAGTTGTAAGAGAGACACAACAGAAGTTCAATGCTGGATACCGTAGCTGGGGTTCAAGCTTTGTGGCTCTGAATGACTTCTATGATCCTAAACAAGGATATCTCCTCAACAATGTTTGCATCATTGAAGTCCGAATCTCTGTCTCCGATGTTGCATTTGACACCAACATTTTTAACATCAATAATAATAATAATGTCTCATCATCTACTCATCACTCTAACAATCAAACTTCAAATGAGACACTGAGCCGTTCAACTTCCACCACAACCCAAGAAGATGATGTTAATGGAATAACAACATTACAACCTAATTCAGATGATGTAGTACACTATGTGCCTACAGCACCACCTCTATTATATCCTACTATTATATGTGATGATGAACCTTTAGTAGTGCCCTTAAACACTACTACTCTTAGTGAGATTCTAGATGTGAAAAGCTTAGGAGAAGAAGAAAAAGCTTATGTTCCCTTGTTGGAAGAGGTATGTTCATGGCACCCTTCGCTGATCCAAAGCCAAATGAGAAAGAGTCCGAAATTCATTCAATGGGCATTCATAGCATTAGGTCAAGTCCTACATTTCCTCAAGACAACAAAGGCAAAGGACATGGACGAGAATGCATTCAACAAACTCCAATGTCTTTGGGAGGAGCTTCAGTTGTTCGGATTCGAGCTGAGTTGGTTGGAGCCGCATGTTGAATCTGCATTGGACATGAAAGGCTACTTGGAAAGAGTGAAGACCCTAAAGGAGAATGTGATTGGTTTGGAGATTGAGATGAAGATGCTCCGAGCCAAAATGGCTGTGGCAGAAATCGATCTTGAGTCGGCAAAGAGAGACTTGGAAATGGCAGAGGTACAAATGGGATTTGAAGAAAAGGACATGGATAAGGAACTGGGATATGGTTATGGATATGGTTATGTCATATCTTAA 1197 0.396 MENYQQGKEIEKFTWVIENFSKKNTKKLRSKSFQVGGCKWQIHVHRIEKAKGMEYLSLYLKVGGSVPSFGWSKYAYFSLALINHMDPQKSVVRETQQKFNAGYRSWGSSFVALNDFYDPKQGYLLNNVCIIEVRISVSDVAFDTNIFNINNNNNVSSSTHHSNNQTSNETLSRSTSTTTQEDDVNGITTLQPNSDDVVHYVPTAPPLLYPTIICDDEPLVVPLNTTTLSEILDVKSLGEEEKAYVPLLEEVCSWHPSLIQSQMRKSPKFIQWAFIALGQVLHFLKTTKAKDMDENAFNKLQCLWEELQLFGFELSWLEPHVESALDMKGYLERVKTLKENVIGLEIEMKMLRAKMAVAEIDLESAKRDLEMAEVQMGFEEKDMDKELGYGYGYGYVIS* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0409 398 Pfam MATH domain 17 137 IPR002083 GO:0005515
Amo06g0409 398 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 374 - -
Amo06g0409 398 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 7 145 IPR008974 GO:0005515
Amo06g0409 398 ProSiteProfiles MATH/TRAF domain profile. 10 135 IPR002083 GO:0005515
Amo06g0409 398 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 11 374 - -
Amo06g0409 398 SUPERFAMILY TRAF domain-like 12 140 - -
Amo06g0409 398 MobiDBLite consensus disorder prediction 153 187 - -
Amo06g0409 398 SMART math_3 12 116 IPR002083 GO:0005515
Amo06g0409 398 Coils Coil 327 382 - -
Amo06g0409 398 CDD MATH 12 135 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0409 Amo-Chr6 5521244 5524707 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0409 - - ahf:112695910 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4068 16 153137033 153139753 Amo06g0409 06 5521244 5524707 hybridization
Amo12g3243 12 121240341 121250154 Amo06g0409 06 5521244 5524707 PCT