Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3243 ATGGAAAATCATCAAACAATGAGTGAGAAGTTTGAGAAATTCACATGGACCATCAACAATAATTTCTCCGTGCTGGTGGAGTTTGATAAGTACCAGAGCATTTCTGTGGCTATAGATGAGAACCGCTTTATGGATTTTATCTTGGATGTTGTTGATTGGATTCAAAGACACAATGGACAAGTAAGATTCACTGAAGATACTCGTCGTGGAAGTTGTGTTTTCAGTTGGAGGACGTCTTTGAATCCACTAGAACTTACTTTTAATGATAATTTAATCATTGTTGCCGAATTTTTCGTGAAGGAATCACCACATCATCATAAACAGTTAGACGATGGAACTAGTAACACTATTATTGATGATTCCTCAAAACCATGTTTTCAAGTTTATGAAGATTTTGAGAACACAAATGAAAAGGGTTTTGTTCAATTGGCAGAGGAAGCTTGTCATAAGCATCCATCAGTCATTGAATGTCATAAGAACAAAAATCATAGTTCTATGTTCACCAAGTGGGGATTCATTGCATTGGGAAGAGTGTTACATTTTCTTAAGACTAAGAAGGTGAAGGATATGAATGATGAAGGTTGCAAGGAACTTCAAGTTTTATGGAAAGAAGTCATTGCTTTCGGATTTGATGATTTGGCTTGGTTGGAGCCTCATGTTAAGTGTGCTTTGGGCATGAGGAATCATAAGGAGAGAACTATGCATGTGAAACAAATGAAGGAGAATGTGGCAGCTCTTGAAGTTGATCTTAAAGTGGCAAGAGAAGAATTGGTTAAAGCTCAAGAAGGTTTTGAAGAAAGAGACTTGAATGATCGGTGGTATCAAATGGAGAATCAAGAAAAAATTGGTGAAACGTTTGAGACGTTCAAATGGACCATTAAGGACTTGTCTAAGTTGAACACCAAGAAGCTTTACTCTCAGAACTTCAACATTGGTGGTCATCCATGGCGGATTCTTATGTATCCAAAGGGAAACAATGTGGGTTACTTGTCAATTTATTTAGATGCTGGTACTTTGCCTTGTGTCAATGACAAATTGACACAAACAAAAGAAACTCAACACACATTCAATGCCAGAGAGAGTGACTGGGGCTTCACATCGTTTATACCTTTAGCTCACTTTTATGATCATAGCAAGGGGTTTATTGTGAACAACACTTGTATAATTGAAGCTAAGATTTCCGTTAGTACTCCAGAACTCGAGAAAAAAGTTGATCAACCTGCTCTACCAGTTTCTGTGCAAGTTCCTGCTGAGCCTATTGAACATGCTGATAATCCTTTATCTATGGACATGTCTGCAATCCCAATTGATGAGCTTGTTGATTTCAGGGGTTTAGGGAAAATAGAAAAAGCATTTGTTCCTCTTCTAGACGAMGTATGTGCAAAGCATCCCTCAGTTATTGGATGCCAGAAGAAGAGAAGTCGAAGGTTTAGCGAATGGGCATTCACGGCTTTGGGAAGAGTTCTGCATTTCCTCAAGACTAAAAAGGCGAGAGATATGGATGAAGAGGCTTGTAGCCATCTTCAAATCTTATGGGAGGAACTCGAGACGTTTAGATTTGATTTGACTTGGCTTGAGCCGCATGTTCAATCTGCCTTAGGTATGAAAAATTACATGGAAAGATCCGCTAAGGTGAAAGGTGTGAAGGAGAATGTGGCTGCTCTGGAGATGGAAATGAAGAAGCTGAAGGCAATGGTTGCTGCTGTAGAAGTTGATCTTGAATTGGCAAGAAGAGAATTGGTGAAAGTTGAAGAAGGCTTTGAAGAGAGAGATTTGGATGAAAGTATTGGTGAAACGTTTGAGACGTTCAAATGGACCATTAAGGACTTATCTAAGTTGAACACCAAGAAGATTTACTCTCAGGAATTCTTCATTGGTGGACATTCATGGCGGATTCTTATGTTTCCGAAAGGTAACAAGGTGGTTTACTTGTCGATGTATTTGGACGCTGGTGATGCTGCTACTCTGCCAAATGGATGGACCAGATTTTCCAAATTCCAGTTGGTTCTGATTAATCAGGTTAATAGCAAAATGACAGAAGTAAGAGAAACTCAACACACATTCAATGCCAGAGAGAGTGACTGGGGCTTCATATCATTTATACCTTTAGCTGACTTTTATGATCATAGCAAGGGGTTTATTGTGGACGACACTTGTATTATTGAAGCCAAGATTTCCGTCAGCCACCCAGAACTTGAGAAAAAGGTTGATGAAGCTGCTCCACCAATTTCTGTGCAAGTTCCTGCTAAGCCTATTGAACATGCTGATAATCCTTTACCTATGGACATATCTGCAATCCCAATTGATGAGCTTGTTGATTTCAGGGGTGTTAGGAAAGTAGAAAAAGCGTTTGTTCTTACGACGAAGTATATGCAAAAAGACTTTTGGTTGCCAAAGAGAAGAGAAGTAAGAGGTTTAGCGAATGGGCATTCACAGCTTTGGGAAGAGTTCTGCATTTCCTCAAGACTAAAAAGTGTGAAGGAGAATGTGGCTGCTCTGGAGATGGAAATGAAGAAGCTGAAGGCAATGGTTGCTTCCGTAGAAGTTGATCTTGAAATGGCAAGAAGAGAATTGGTGAAAGTTGAAGAAGGCTTTGAAGAGATAGATTTGGATGCTGAAGTTTGTCATCGACATCCTAATGATAATCACGTAATGTCTTTGGTTACAAAATATAACAACAACAAAAACAACTTAGTGGATTTCAAGGGTTTATGCGAAGTACGAAAAGATTTTGTTCAACTATTCGAGGAAGCGTGTTCTAAACATCCTGAACTTGTTAGAGGAGTGAAAAGGAGAAATTGGAGTCAAAATTTGACTGAAAGATTATTTATGATTTTGGGAAGAGTTCTACATTTTTTAAAGAGTTATAAAGATGTAAAAGACATGAATGATGATACTTATGATGAAGAGATTCAGGATTTGTGGGAGCAACTTAAATCTTTTGGATTTGATGATCTGATTTGA 2964 0.385 MENHQTMSEKFEKFTWTINNNFSVLVEFDKYQSISVAIDENRFMDFILDVVDWIQRHNGQVRFTEDTRRGSCVFSWRTSLNPLELTFNDNLIIVAEFFVKESPHHHKQLDDGTSNTIIDDSSKPCFQVYEDFENTNEKGFVQLAEEACHKHPSVIECHKNKNHSSMFTKWGFIALGRVLHFLKTKKVKDMNDEGCKELQVLWKEVIAFGFDDLAWLEPHVKCALGMRNHKERTMHVKQMKENVAALEVDLKVAREELVKAQEGFEERDLNDRWYQMENQEKIGETFETFKWTIKDLSKLNTKKLYSQNFNIGGHPWRILMYPKGNNVGYLSIYLDAGTLPCVNDKLTQTKETQHTFNARESDWGFTSFIPLAHFYDHSKGFIVNNTCIIEAKISVSTPELEKKVDQPALPVSVQVPAEPIEHADNPLSMDMSAIPIDELVDFRGLGKIEKAFVPLLDXVCAKHPSVIGCQKKRSRRFSEWAFTALGRVLHFLKTKKARDMDEEACSHLQILWEELETFRFDLTWLEPHVQSALGMKNYMERSAKVKGVKENVAALEMEMKKLKAMVAAVEVDLELARRELVKVEEGFEERDLDESIGETFETFKWTIKDLSKLNTKKIYSQEFFIGGHSWRILMFPKGNKVVYLSMYLDAGDAATLPNGWTRFSKFQLVLINQVNSKMTEVRETQHTFNARESDWGFISFIPLADFYDHSKGFIVDDTCIIEAKISVSHPELEKKVDEAAPPISVQVPAKPIEHADNPLPMDISAIPIDELVDFRGVRKVEKAFVLTTKYMQKDFWLPKRREVRGLANGHSQLWEEFCISSRLKSVKENVAALEMEMKKLKAMVASVEVDLEMARRELVKVEEGFEEIDLDAEVCHRHPNDNHVMSLVTKYNNNKNNLVDFKGLCEVRKDFVQLFEEACSKHPELVRGVKRRNWSQNLTERLFMILGRVLHFLKSYKDVKDMNDDTYDEEIQDLWEQLKSFGFDDLI* 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3243 987 Pfam MATH domain 607 727 IPR002083 GO:0005515
Amo12g3243 987 Pfam MATH domain 293 395 IPR002083 GO:0005515
Amo12g3243 987 ProSiteProfiles MATH/TRAF domain profile. 600 725 IPR002083 GO:0005515
Amo12g3243 987 ProSiteProfiles MATH/TRAF domain profile. 286 393 IPR002083 GO:0005515
Amo12g3243 987 Coils Coil 823 857 - -
Amo12g3243 987 CDD MATH 602 725 IPR002083 GO:0005515
Amo12g3243 987 SUPERFAMILY TRAF domain-like 288 396 - -
Amo12g3243 987 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 88 259 - -
Amo12g3243 987 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 286 584 - -
Amo12g3243 987 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 598 737 IPR008974 GO:0005515
Amo12g3243 987 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 284 404 IPR008974 GO:0005515
Amo12g3243 987 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 601 811 - -
Amo12g3243 987 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 286 584 - -
Amo12g3243 987 SUPERFAMILY TRAF domain-like 602 728 - -
Amo12g3243 987 Coils Coil 545 579 - -
Amo12g3243 987 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 88 259 - -
Amo12g3243 987 PANTHER TRAF-LIKE SUPERFAMILY PROTEIN 601 811 - -
Amo12g3243 987 SMART math_3 602 706 IPR002083 GO:0005515
Amo12g3243 987 SMART math_3 288 374 IPR002083 GO:0005515
Amo12g3243 987 Coils Coil 236 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3243 Amo-Chr12 121240341 121250154 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3243 - - adu:107476101 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3243 12 121240341 121250154 Amo16g4068 16 153137033 153139753 PCT
Amo12g3243 12 121240341 121250154 Amo06g0409 06 5521244 5524707 PCT