Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3648 ATGGCACACACTAGCTTAATAATGCCGAACCCTAACCACGCTTCCTCTCCTTCTCGATCACCCTTGTCGATTCAATTCTCTTCGATCCCAACCATGGACCGCATTTTCTCCAGTAAGAATTTCCTTTATAATAGGCTTCGATCTCAGCCTCTCAGCCTTACTGTTCTCAAATTGGATGGATCTACCTTCGATATTCAAGTTGAGAAGACAGCAACTATTGCTGAGCTTAAGGAGGCGGTGAAGGTGGTGTTCAGTCACATGCCTCAGAAGGGGCCAGGGAAGATTTCATGGCCACATGTTTGGCGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTTGTCAAAGATGACGATTACCTGAGAAATTATGGCATCAAGGACGGTGATCAGCTTCGTTTCATCCGCCATGTCTCAAACTATTATAGTGCTCGAAGAAGAAAGCGATCAAAGAAACGAGTTTTCCATTTTAAACAGCACAGCAGGTCATCCTCGCAAGTGAATAGTTATCAACCTAAAGAACATAGTGATGATGATGAAGAAGAAGAAATTTGTTCCGATGAGGTAGCCACTGAGGATAGGAAGATCGAGCTGTACAATAAAGTACGAGTTCATGTTGGAAAGAACAAGTTAACCAGCTTTGTTGCAGAGTTATTCTCATACAACAGGCTGCCCATTGTACCGAAAACGAGAACTCAAAGTAGGATATTCTTCCCCTCAGTGGTCGCCAAATGTTTACTAGGAAGTTTTAGAAAGATGAGAAGAGTCATAAGCTTTCGCAGGAGGGGACACTATCCTTGGAGGGATATCAGAAGACAGTATTGA 822 0.4331 MAHTSLIMPNPNHASSPSRSPLSIQFSSIPTMDRIFSSKNFLYNRLRSQPLSLTVLKLDGSTFDIQVEKTATIAELKEAVKVVFSHMPQKGPGKISWPHVWRQFCLCYDGQKLVKDDDYLRNYGIKDGDQLRFIRHVSNYYSARRRKRSKKRVFHFKQHSRSSSQVNSYQPKEHSDDDEEEEICSDEVATEDRKIELYNKVRVHVGKNKLTSFVAELFSYNRLPIVPKTRTQSRIFFPSVVAKCLLGSFRKMRRVISFRRRGHYPWRDIRRQY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3648 273 ProSiteProfiles Ubiquitin domain profile. 51 134 IPR000626 GO:0005515
Amo16g3648 273 CDD Ubl_SNRNP25 51 136 IPR040610 -
Amo16g3648 273 SUPERFAMILY Ubiquitin-like 48 140 IPR029071 -
Amo16g3648 273 MobiDBLite consensus disorder prediction 1 20 - -
Amo16g3648 273 Pfam Ubiquitin-like domain 52 137 IPR040610 -
Amo16g3648 273 PANTHER - 4 269 - -
Amo16g3648 273 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 4 269 IPR039690 GO:0000398|GO:0005689
Amo16g3648 273 MobiDBLite consensus disorder prediction 145 183 - -
Amo16g3648 273 SMART ubq_7 51 136 IPR000626 GO:0005515
Amo16g3648 273 Gene3D - 45 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3648 Amo-Chr16 147247430 147251076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3648 - - ahf:112697496 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3648 16 147247430 147251076 Amo06g2846 06 93823172 93826675 hybridization
Amo16g3648 16 147247430 147251076 Amo08g2116 08 34019583 34021589 PCT
Amo08g2116 08 34019583 34021589 Amo16g3648 16 147247430 147251076 PCT